Fix venv related installation issues

FFroehlich commented 6 months ago

creates a venv before running cmake to avoid issues in externally managed environments, fixes #2355
replaces a stray pip with pip3

codecov[bot] commented 6 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 77.72%. Comparing base (46d9d88) to head (b524013).

Additional details and impacted files

[![Impacted file tree graph](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/graphs/tree.svg?width=650&height=150&src=pr&token=1bt9lbspzk&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## develop #2356 +/- ## =========================================== + Coverage 77.62% 77.72% +0.10% =========================================== Files 324 324 Lines 20769 20769 Branches 1449 1449 =========================================== + Hits 16121 16143 +22 + Misses 4645 4623 -22 Partials 3 3 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [cpp](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `73.52% <ø> (+0.10%)` | :arrow_up: | | [cpp_python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `34.26% <ø> (ø)` | | | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.75% <ø> (ø)` | | | [python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `72.32% <ø> (+0.10%)` | :arrow_up: | | [sbmlsuite](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `∅ <ø> (∅)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more. [see 4 files with indirect coverage changes](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2356/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)