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AMICI-dev / AMICI

Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
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Optionally include measurements in `plot_observable_trajectories` #2381

Closed dweindl closed 5 months ago

dweindl commented 5 months ago

If some ExpData is provided, plot_observable_trajectories will now also visualize the measurements.

Example: image

codecov[bot] commented 5 months ago

Codecov Report

Attention: Patch coverage is 0% with 14 lines in your changes are missing coverage. Please review.

Project coverage is 77.87%. Comparing base (4d40911) to head (1d98fb4). Report is 1 commits behind head on develop.

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/graphs/tree.svg?width=650&height=150&src=pr&token=1bt9lbspzk&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## develop #2381 +/- ## =========================================== + Coverage 77.73% 77.87% +0.13% =========================================== Files 324 324 Lines 20864 20869 +5 Branches 1458 1458 =========================================== + Hits 16219 16251 +32 + Misses 4642 4615 -27 Partials 3 3 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [cpp](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `76.27% <0.00%> (+2.75%)` | :arrow_up: | | [cpp_python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `34.22% <0.00%> (-0.01%)` | :arrow_down: | | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.81% <0.00%> (-0.02%)` | :arrow_down: | | [python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `72.42% <0.00%> (+0.13%)` | :arrow_up: | | [sbmlsuite](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `?` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [python/sdist/amici/plotting.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3Bsb3R0aW5nLnB5) | `0.00% <0.00%> (ø)` | | ... and [5 files with indirect coverage changes](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2381/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)