AMICI-dev / AMICI

Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
Other
107 stars 30 forks source link

Numpy 2.0 compatibility #2392

Closed dweindl closed 1 month ago

dweindl commented 3 months ago

NOTE: There are some test failures (all of type ValueError: could not convert string to float: 'np.float64(0.10132835605031565)') related to today's numpy 2.0 release which is incompatible with the current sympy 1.12. This will be fixed in sympy 1.13 for which there is already a release candidate and which I guess will be released shortly, so I would ignore those in amici for now.

Closes #2377

codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 36.66%. Comparing base (6277a5e) to head (48ace67).

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2392/graphs/tree.svg?width=650&height=150&src=pr&token=1bt9lbspzk&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2392?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## develop #2392 +/- ## ======================================== Coverage 36.66% 36.66% ======================================== Files 103 103 Lines 14881 14881 Branches 1388 1388 ======================================== Hits 5456 5456 Misses 9116 9116 Partials 309 309 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2392/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2392/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.66% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more.
socket-security[bot] commented 1 month ago

New and removed dependencies detected. Learn more about Socket for GitHub ↗︎

Package New capabilities Transitives Size Publisher

🚮 Removed packages: pypi/oldest-supported-numpy@2023.12.21, pypi/oldest-supported-numpy@2023.12.21

View full report↗︎