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AMICI-dev / AMICI

Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
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setup.cfg -> pyproject.toml #2408

Closed dweindl closed 5 months ago

dweindl commented 5 months ago

Let's reduce the number of package configuration files...

This might also help to get a proper dependency graph.

socket-security[bot] commented 5 months ago

New and removed dependencies detected. Learn more about Socket for GitHub ↗︎

Package New capabilities Transitives Size Publisher
pypi/antimony@2.13.4 None 0 14.2 MB 0u812, adelhpour, andrewbriand, ...3 more
pypi/antimony@2.14.0 None 0 14.5 MB 0u812, adelhpour, andrewbriand, ...3 more
pypi/h5py@3.11.0 environment, eval, filesystem, shell, unsafe 0 15.9 MB Thomas.Caswell, matthew.brett, scopatz, ...1 more
pypi/jupyter@1.0.0 environment 0 43 kB Kyle.Kelley, bgranger, darian, ...5 more
pypi/matplotlib@3.9.0rc2 environment, eval, filesystem, network, shell, unsafe 0 67.5 MB ivanov, matthew.brett, mdboom2
pypi/mpmath@1.4.0a1 environment, eval, filesystem, network, unsafe 0 3.7 MB fredrik
pypi/pandas@2.2.2 environment, eval, filesystem, network, shell, unsafe 0 62.2 MB MarcoGorelli, datapythonista, jbrockmendel, ...8 more
pypi/pooch@1.8.1 environment, filesystem, network Transitive: eval, shell, unsafe +145 96.7 MB Leonardo.Uieda, santisoler
pypi/pytest-rerunfailures@14.0 eval, network Transitive: environment, filesystem, shell +2 2.69 MB DanielHavlikGocept, florianpilz, icemac, ...4 more
pypi/python-libsbml@5.20.2 environment, eval, filesystem, network, shell, unsafe 0 242 MB bgoli, frankbergmann.myopenid.com, smkeating
pypi/scipy@1.13.0 environment, eval, filesystem, network, shell, unsafe 0 152 MB matthew.brett, pv, rgommers, ...3 more
pypi/seaborn@0.13.2 environment, eval, filesystem Transitive: network, shell, unsafe +306 2.96 GB mwaskom
pypi/shyaml@0.6.2 environment, shell Transitive: eval, filesystem, network, unsafe +53 79.2 MB vaab
pypi/toposort@1.10 None 0 40 kB ericvsmith
pypi/wurlitzer@3.0.3 eval, filesystem 0 34.6 kB minrk

View full report↗︎

codecov[bot] commented 5 months ago

Codecov Report

Attention: Patch coverage is 33.33333% with 2 lines in your changes are missing coverage. Please review.

Project coverage is 77.61%. Comparing base (01cc4e9) to head (9dc88c7).

:exclamation: Current head 9dc88c7 differs from pull request most recent head 8686044. Consider uploading reports for the commit 8686044 to get more accurate results

Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/graphs/tree.svg?width=650&height=150&src=pr&token=1bt9lbspzk&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## develop #2408 +/- ## =========================================== - Coverage 77.65% 77.61% -0.04% =========================================== Files 324 324 Lines 20925 20927 +2 Branches 1464 1464 =========================================== - Hits 16249 16243 -6 - Misses 4673 4681 +8 Partials 3 3 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [cpp](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `73.39% <33.33%> (-0.04%)` | :arrow_down: | | [cpp_python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `34.16% <33.33%> (-0.01%)` | :arrow_down: | | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.74% <33.33%> (-0.01%)` | :arrow_down: | | [python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `72.15% <33.33%> (-0.04%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [python/sdist/amici/custom\_commands.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fcustom_commands.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL2N1c3RvbV9jb21tYW5kcy5weQ==) | `52.05% <33.33%> (-1.47%)` | :arrow_down: | ... and [2 files with indirect coverage changes](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2408/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)