Release 0.25.2

[dweindl]

There are some test failures (all of type ValueError: could not convert string to float: 'np.float64(0.10132835605031565)') related to today's numpy 2.0 release which is incompatible with the current sympy 1.12. This will be fixed in sympy 1.13 for which there is already a release candidate and which I guess will be released shortly, so I would ignore those in amici for now.

• [x] #2392
• [x] #2458, #2459

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 36.66%. Comparing base (17d6e77) to head (6da397a).

Additional details and impacted files

[](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## master #2457 +/- ## =========================================== - Coverage 77.67% 36.66% -41.01% =========================================== Files 324 103 -221 Lines 20930 14881 -6049 Branches 1464 1388 -76 =========================================== - Hits 16257 5456 -10801 - Misses 4670 9116 +4446 - Partials 3 309 +306 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [cpp](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `?` | | | [cpp_python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `?` | | | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.66% <ø> (+<0.01%)` | :arrow_up: | | [python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `?` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [python/sdist/amici/petab/cli/import\_petab.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fcli%2Fimport_petab.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL2NsaS9pbXBvcnRfcGV0YWIucHk=) | `0.00% <ø> (ø)` | | | [python/sdist/amici/petab/import\_helpers.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fimport_helpers.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL2ltcG9ydF9oZWxwZXJzLnB5) | `86.15% <ø> (+3.07%)` | :arrow_up: | | [python/sdist/amici/petab/sbml\_import.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fsbml_import.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3NibWxfaW1wb3J0LnB5) | `54.28% <ø> (-0.65%)` | :arrow_down: | ... and [290 files with indirect coverage changes](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2457/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)

[socket-security[bot]]

New and removed dependencies detected. Learn more about Socket for GitHub ↗︎

Package	New capabilities	Transitives	Size	Publisher
pypi/numpy@1.26.4	environment, eval, filesystem, network, shell, unsafe	0	100 MB	charlesr.harris, matthew.brett, mattip, ...2 more

🚮 Removed packages: pypi/oldest-supported-numpy@2023.12.21, pypi/oldest-supported-numpy@2023.12.21

View full report↗︎