Replace deprecated `petab.Problem.from_files` in `amici.petab.cli.import_petab._main`

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Advanced Multilanguage Interface to CVODES and IDAS

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Replace deprecated `petab.Problem.from_files` in `amici.petab.cli.import_petab._main` #2460

Closed dweindl closed 1 week ago

dweindl commented 3 weeks ago

Replace deprecated petab.Problem.from_files in amici.petab.cli.import_petab._main.

Also deprecate passing individual PEtab tables to amici_import_petab on the command line (who is doing that anyways?), but while it's still in place, check that the parameter table is present.