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AMICI-dev / AMICI

Advanced Multilanguage Interface to CVODES and IDAS
https://amici.readthedocs.io/
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Release 0.26.0 #2473

Closed dweindl closed 3 months ago

dweindl commented 3 months ago

waiting for new libpetab release

codecov[bot] commented 3 months ago

Codecov Report

Attention: Patch coverage is 0% with 13 lines in your changes missing coverage. Please review.

Project coverage is 77.81%. Comparing base (88a5454) to head (3882d94). Report is 32 commits behind head on master.

Files with missing lines Patch % Lines
python/sdist/amici/petab/cli/import_petab.py 0.00% 13 Missing :warning:
Additional details and impacted files [![Impacted file tree graph](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/graphs/tree.svg?width=650&height=150&src=pr&token=1bt9lbspzk&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) ```diff @@ Coverage Diff @@ ## master #2473 +/- ## =========================================== + Coverage 36.66% 77.81% +41.14% =========================================== Files 103 324 +221 Lines 14881 20933 +6052 Branches 1388 1464 +76 =========================================== + Hits 5456 16288 +10832 + Misses 9116 4642 -4474 + Partials 309 3 -306 ``` | [Flag](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [cpp](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `76.20% <0.00%> (?)` | | | [cpp_python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `34.08% <0.00%> (?)` | | | [petab](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `36.64% <0.00%> (-0.02%)` | :arrow_down: | | [python](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | `72.35% <0.00%> (?)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files with missing lines](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | Coverage Δ | | |---|---|---| | [python/sdist/amici/petab/conditions.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fconditions.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL2NvbmRpdGlvbnMucHk=) | `97.43% <ø> (ø)` | | | [python/sdist/amici/petab/import\_helpers.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fimport_helpers.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL2ltcG9ydF9oZWxwZXJzLnB5) | `86.15% <ø> (ø)` | | | [python/sdist/amici/petab/parameter\_mapping.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fparameter_mapping.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3BhcmFtZXRlcl9tYXBwaW5nLnB5) | `81.15% <ø> (+5.75%)` | :arrow_up: | | [python/sdist/amici/petab/petab\_import.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fpetab_import.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3BldGFiX2ltcG9ydC5weQ==) | `66.66% <ø> (ø)` | | | [python/sdist/amici/petab/petab\_problem.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fpetab_problem.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3BldGFiX3Byb2JsZW0ucHk=) | `87.69% <ø> (ø)` | | | [python/sdist/amici/petab/pysb\_import.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fpysb_import.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3B5c2JfaW1wb3J0LnB5) | `51.85% <ø> (ø)` | | | [python/sdist/amici/petab/sbml\_import.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fsbml_import.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3NibWxfaW1wb3J0LnB5) | `54.28% <ø> (ø)` | | | [python/sdist/amici/petab/simulations.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fsimulations.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3NpbXVsYXRpb25zLnB5) | `92.85% <ø> (+1.02%)` | :arrow_up: | | [python/sdist/amici/petab/simulator.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Fsimulator.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3NpbXVsYXRvci5weQ==) | `100.00% <ø> (ø)` | | | [python/sdist/amici/petab/util.py](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree&filepath=python%2Fsdist%2Famici%2Fpetab%2Futil.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev#diff-cHl0aG9uL3NkaXN0L2FtaWNpL3BldGFiL3V0aWwucHk=) | `86.66% <ø> (ø)` | | | ... and [5 more](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev) | | ... and [287 files with indirect coverage changes](https://app.codecov.io/gh/AMICI-dev/AMICI/pull/2473/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=AMICI-dev)