Feature request: integrate auto QC scores to dashboard

AMP-SCZ / eeg-qc-dash

Plotly/Dash based web application for checking quality of EEGs

Apache License 2.0

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Feature request: integrate auto QC scores to dashboard #37

Open tashrifbillah opened 2 weeks ago

tashrifbillah commented 2 weeks ago

Copying @speroNCIRE 's summary of auto QC score integration. This reflects the original discussion we had in AMP-SCZ annual meeting.

Currently, I am working on an idea to integrate auto QC scores to the .scores.pkl every night. If that could be done, existing dashboard would just show auto QC scores without requiring any modification.

tashrifbillah commented 2 weeks ago

Algorithm:

parse filename to get 7 digit subject ID
read file, obtain session ID
construct dictionary key {subject}_{session}
check if value for that key is -9 in .scores.pkl
- if there is an auto QC score in that line {10,13,14}, replace -9 with that score
save .scores.pkl back

tashrifbillah commented 2 weeks ago

Synchronization:

Currently, there is a VM-->ERIS .scores.pkl rsync.
Ideally, after Spero writes the auto QC scores, we should populate them in the .scores.pkl.
Soon after populating, it should be copied back to the VM
Currently, only DPACC users can write scores. We can time the 3rd step according to their sleep time
Non-DPACC users will experience the lag of 'one refresh' during the copy back. Write after they refresh, they should see new auto QC scores.