other_files column to show only the zip files rather than including all files.
expected_mri_path column is added (which is now used as the input to Owen's check_when_transferred function)
check_when_transferred function simplified
extract_missing_data_info_new is replacing extract_missing_data_information. The new function converts the REDCap json structure to pandas dataframe for easier handling and only extracts chrmiss_domain_type___3 while ignoring other columns. Need Owen and Nick's review if chrmiss_domain_type___3 would be enough to catch missing MRI data.
Looks great. "Need Owen and Nick's review if chrmiss_domain_type___3 would be enough to catch missing MRI data." I think this will work in most cases, but not all. I will send a more detailed message.
This PR includes the following updates
other_files
column to show only the zip files rather than including all files.expected_mri_path
column is added (which is now used as the input to Owen'scheck_when_transferred
function)check_when_transferred
function simplifiedextract_missing_data_info_new
is replacingextract_missing_data_information
. The new function converts the REDCap json structure to pandas dataframe for easier handling and only extractschrmiss_domain_type___3
while ignoring other columns. Need Owen and Nick's review ifchrmiss_domain_type___3
would be enough to catch missing MRI data.