ANGSD-wrapper / angsd-wrapper

Utilities for analyzing next generation sequencing data.
MIT License
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.clst files for shiny graphing for PCA plots #12

Open jrmandel opened 2 years ago

jrmandel commented 2 years ago

Trying to use '.clst' clusters file to color code subgroups. I must be coding my cluster file incorrectly. I should only have one 'gross' cluster, but there are three, see image. Thanks in advance. Loving using this wrapper!

FID IID CLUSTER
HeliagrossG5_11_4   1   gross
HeliagrossG9_9_4    1   ang
HeliavertA5_11_7    1   vert
HeliavertE11_9_8    1   miss
HeliavertE12_9_5    1   miss
HeliavertG2_9_3 1   vert
HeliavertG3_9_7 1   vert
HeliavertG4_9_6 1   miss
HeliavertH12_11_3   1   miss
PCA_plot