search

ANGSD-wrapper / angsd-wrapper

Utilities for analyzing next generation sequencing data.
MIT License
14 stars 4 forks source link

Install issue;gsl #9

Open Andrew-N-Black opened 3 years ago

Andrew-N-Black commented 3 years ago

Hello, I realize that there is active development going on but wanted to make sure you were aware of an issue that is currently preventing install / compilation:

read_data.cpp:1:10: fatal error: gsl/gsl_rng.h: No such file or directory

Hopefully this will be a quick fix? Thanks! -A

shamanpi commented 3 years ago

Hello, Without more information I can make a few guesses, but the most likely issue is the compiler can't find the GNU Scientific Library (GSL) code. If you don't know if it's installed on your system, then I'd suggest using either sudo apt-get install libgsl-dev in Linux or brew install gsl in MacOS and then trying again.

Otherwise, there was a similar discussion here about how to point the compiler to the correct path if GSL is in fact correctly installed on your system, by using ANGSD's Makefile.

If neither of those work fully, let me know and I'll try and help further. Cheers, Samuel Hamann