ANGSD / angsd

Program for analysing NGS data.
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Filter -minInd not working properly #41

Closed fgvieira closed 8 years ago

fgvieira commented 8 years ago

I've recently noticed that the -minInd filter in ANGSD is not working properly. For example, using -minInd 76 on a test run gives a MAF file:

chromo position major minor ref knownEM pK-EM nInd chr10 90625430 C G C 0.135223 0.000000e+00 76 chr10 90625447 G A G 0.031195 1.791576e-10 75 chr10 90625462 C A A 0.319601 0.000000e+00 76

best,

ANGSD commented 8 years ago

Thanks for reporting this.