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ANGSD / angsd

Program for analysing NGS data.
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Segmentation Fault #612

Open ciselkemahli opened 10 months ago

ciselkemahli commented 10 months ago

Hello,

I got the segmentation fault problem when I ran the below code. It reads all the bam files in the bamlist correctly. (The ANGSD version 0.929) When I removed doVcf and doPost with it, the problem was gone, and it worked properly. There can be a bug or something; I do not know, so I want to let you know. Thank you.

~/bin/angsd/angsd -b $pop -out output -ref $ref -GL 1 -doMajorMinor 1 -doMaf 1 -doGlf 3 -minInd $mInd -SNP_pval 1e-6 -minmaf 0.05 -nThreads 8 -minMapQ 10 -minQ 20 -doCounts 1 -doVcf 1 -doPost 1 -setMinDepthInd 6

ANGSD commented 10 months ago

Dear Cisel, please try the newest version if the software.

Best regards

On 29 Jan 2024, at 10.09, Çisel Kemahlı @.***> wrote:

Hello,

I got the segmentation fault problem when I ran the below code. It reads all the bam files in the bamlist correctly. (The ANGSD version 0.929) When I removed doVcf and doPost with it, the problem was gone, and it worked properly. There can be a bug or something; I do not know, so I want to let you know. Thank you.

~/bin/angsd/angsd -b $pop -out output -ref $ref -GL 1 -doMajorMinor 1 -doMaf 1 -doGlf 3 -minInd $mInd -SNP_pval 1e-6 -minmaf 0.05 -nThreads 8 -minMapQ 10 -minQ 20 -doCounts 1 -doVcf 1 -doPost 1 -setMinDepthInd 6

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