there is empty fastq after runnign stfr

ANHIG / IMGTHLA

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute

http://www.ebi.ac.uk/ipd/imgt/hla/

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Closed jeongmeani closed 3 years ago

jeongmeani commented 3 years ago

Hi,

i have some WES data, and using HLA-HD i get HLA-typing result. but on some data all alleles is "Not typed"

so i run per lines on hlahd.sh. and i have realized fastq of stfr output is empty.

can i get this reason?

other hla-typing callers(Optitype, Polysolver) work on this data.

Best Regards

Jeongmin

jingydz commented 3 years ago

Hi, I have the same question with you, have you solved it yet？@jeongmean

jrob119 commented 3 years ago

The original question does not appear to reference files from this repository. If this is for third party applications we are unable to advise.

jingydz commented 3 years ago

Ok, thanks. ^~^