ANHIG / IMGTHLA

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
http://www.ebi.ac.uk/ipd/imgt/hla/
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A*02:506N #328

Closed AlsoATraveler closed 1 year ago

AlsoATraveler commented 1 year ago

Hello, in version 3.40, why is there no sequence of A*02:506N in A_gen.fasta?

AlsoATraveler commented 1 year ago

Can the sequence of the intron at the corresponding position in A*01:01:01:01 be added at both ends according to the position of the exon? I need sequences at both ends for data simulation.

A01:285N is also the same as A02:506N in version 3.40.

jrob119 commented 1 year ago

The database represent the reference sequences for HLA alleles and only includes sequence that has been confirmed and submitted. We do not impute sequence to fill gaps or match sequence lengths. If you wish to pad sequences, you will need to determine your own local rules for this.