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ANHIG / IMGTHLA

Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
http://www.ebi.ac.uk/ipd/imgt/hla/
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miltiple sequence alignment reference #64

Closed mengyao closed 8 years ago

mengyao commented 8 years ago

Hi, I see the list of the references of the multiple sequence alignment here: http://www.ebi.ac.uk/ipd/imgt/hla/nomenclature/alignments.html May I ask are the alleles in this list part of the human reference genome GRCh38? Does GRCh38 contains all HLA genes?

Many thanks,

Mengyao

ANHIG commented 8 years ago

The references used are verified HLA allele sequences, and determined by the HLA Nomenclature Committee. These IPD-IMGT/HLA references sequences may be included in GRCh38, but we do not take data from GRCh38 for the entries in IPD-IMGT/HLA.

mengyao commented 8 years ago

Thank you for your reply.

Yours,

Mengyao

On Jun 20, 2016, at 11:14 AM, Anthony Nolan HLA Informatics Group notifications@github.com wrote:

The references used are verified HLA allele sequences, and determined by the HLA Nomenclature Committee. These IPD-IMGT/HLA references sequences may be included in GRCh38, but we do not take data from GRCh38 for the entries in IPD-IMGT/HLA.

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