search

ANHIG / IPDKIR

Github for files currently published in the IPD-KIR FTP Directory hosted at the European Bioinformatics Institute
http://www.ebi.ac.uk/ipd/kir/
Other
11 stars 4 forks source link

KIR file kir_nuc.fasta has duplicate sequences #54

Closed colinhercus closed 3 weeks ago

colinhercus commented 1 month ago

Hi,

Following sequences are duplicated in the NUC fasta file

grep "^>" kir_nuc.fasta | uniq -c | grep " 2 " 2 >KIR:KIR00536 KIR2DL5A014 1128 bp 2 >KIR:KIR00537 KIR2DL5A015 1128 bp 2 >KIR:KIR00907 KIR2DL5A022 1128 bp 2 >KIR:KIR00993 KIR2DL5A024 1128 bp 2 >KIR:KIR01191 KIR2DL5A025 1128 bp 2 >KIR:KIR01194 KIR2DL5A026 1128 bp 2 >KIR:KIR01195 KIR2DL5A027 1128 bp 2 >KIR:KIR01202 KIR2DL5A028 1128 bp 2 >KIR:KIR01210 KIR2DL5A029 1128 bp 2 >KIR:KIR01213 KIR2DL5A030 1128 bp 2 >KIR:KIR01220 KIR2DL5A031 1128 bp 2 >KIR:KIR01223 KIR2DL5A032N 1128 bp 2 >KIR:KIR01588 KIR2DL5A040 1128 bp 2 >KIR:KIR01687 KIR2DL5A042 1128 bp 2 >KIR:KIR00259 KIR2DL5A00102 1128 bp 2 >KIR:KIR00260 KIR2DL5A00103 1128 bp 2 >KIR:KIR00262 KIR2DL5A00104 1128 bp 2 >KIR:KIR00263 KIR2DL5A00105 1128 bp 2 >KIR:KIR01201 KIR2DL5A00106 1128 bp 2 >KIR:KIR01214 KIR2DL5A00107 1128 bp 2 >KIR:KIR01218 KIR2DL5A00108 1128 bp 2 >KIR:KIR00391 KIR2DL5A01201 1128 bp 2 >KIR:KIR00389 KIR2DL5A01202 1128 bp 2 >KIR:KIR00029 KIR2DL5A0010101 1128 bp 2 >KIR:KIR00300 KIR2DL5A0010102 1128 bp 2 >KIR:KIR00439 KIR2DL5A0010103 1128 bp 2 >KIR:KIR01039 KIR2DL5A0010104 1128 bp 2 >KIR:KIR01041 KIR2DL5A0010105 1128 bp 2 >KIR:KIR01217 KIR2DL5A0010106 1128 bp 2 >KIR:KIR01196 KIR2DL5A0010901 1128 bp 2 >KIR:KIR01219 KIR2DL5A0010902 1128 bp 2 >KIR:KIR00095 KIR2DL5A0050101 1128 bp 2 >KIR:KIR00249 KIR2DL5A0050102 1128 bp 2 >KIR:KIR00438 KIR2DL5A0050103 1128 bp 2 >KIR:KIR00440 KIR2DL5A0050104 1128 bp 2 >KIR:KIR01209 KIR2DL5A0050105 1128 bp 2 >KIR:KIR00882 KIR2DL5A0210101 1128 bp 2 >KIR:KIR01221 KIR2DL5A0210102 1128 bp 2 >KIR:KIR01222 KIR2DL5A0210103 1128 bp 2 >KIR:KIR00992 KIR2DL5A0230101 1128 bp 2 >KIR:KIR01199 KIR2DL5A0230102 1128 bp 2 >KIR:KIR01200 KIR2DL5A0330101 1128 bp 2 >KIR:KIR01212 KIR2DL5A0330102 1128 bp 2 >KIR:KIR01215 KIR2DL5A0340101 1128 bp 2 >KIR:KIR01216 KIR2DL5A0340102 1128 bp 2 >KIR:KIR00031 KIR2DL5B003 1128 bp 2 >KIR:KIR00032 KIR2DL5B004 1128 bp 2 >KIR:KIR00245 KIR2DL5B009 1128 bp 2 >KIR:KIR00264 KIR2DL5B010 1128 bp 2 >KIR:KIR00265 KIR2DL5B011 1128 bp 2 >KIR:KIR00538 KIR2DL5B016 1128 bp 2 >KIR:KIR00664 KIR2DL5B017 1128 bp 2 >KIR:KIR00684 KIR2DL5B018 1128 bp 2 >KIR:KIR00803 KIR2DL5B019 1128 bp 2 >KIR:KIR00804 KIR2DL5B020 1128 bp 2 >KIR:KIR01205 KIR2DL5B035 1128 bp 2 >KIR:KIR01206 KIR2DL5B036 1128 bp 2 >KIR:KIR01208 KIR2DL5B037 1128 bp 2 >KIR:KIR01190 KIR2DL5B038 1128 bp 2 >KIR:KIR01596 KIR2DL5B041 1128 bp 2 >KIR:KIR00802 KIR2DL5B00203 1128 bp 2 >KIR:KIR00994 KIR2DL5B00204 1128 bp 2 >KIR:KIR01193 KIR2DL5B00205 1128 bp 2 >KIR:KIR00125 KIR2DL5B00601 1128 bp 2 >KIR:KIR00267 KIR2DL5B00602 1128 bp 2 >KIR:KIR00393 KIR2DL5B00603 1128 bp 2 >KIR:KIR00266 KIR2DL5B00802 1128 bp 2 >KIR:KIR00682 KIR2DL5B00803 1128 bp 2 >KIR:KIR00805 KIR2DL5B00804 1128 bp 2 >KIR:KIR00946 KIR2DL5B00805 1128 bp 2 >KIR:KIR00390 KIR2DL5B01301 1128 bp 2 >KIR:KIR00392 KIR2DL5B01302 1128 bp 2 >KIR:KIR00534 KIR2DL5B01303 1128 bp 2 >KIR:KIR00801 KIR2DL5B01304 1128 bp 2 >KIR:KIR00030 KIR2DL5B0020101 1128 bp 2 >KIR:KIR00248 KIR2DL5B0020102 1128 bp 2 >KIR:KIR00301 KIR2DL5B0020103 1128 bp 2 >KIR:KIR00394 KIR2DL5B0020104 1128 bp 2 >KIR:KIR00524 KIR2DL5B0020106 1128 bp 2 >KIR:KIR00632 KIR2DL5B0020107 1128 bp 2 >KIR:KIR01095 KIR2DL5B0020108 1128 bp 2 >KIR:KIR01197 KIR2DL5B0020109 1128 bp 2 >KIR:KIR01198 KIR2DL5B0020110 1128 bp 2 >KIR:KIR01204 KIR2DL5B0020111 1128 bp 2 >KIR:KIR00535 KIR2DL5B0020201 1128 bp 2 >KIR:KIR00972 KIR2DL5B0020202 1128 bp 2 >KIR:KIR00126 KIR2DL5B0070101 1128 bp 2 >KIR:KIR00525 KIR2DL5B0070102 1128 bp 2 >KIR:KIR00244 KIR2DL5B0080101 1128 bp 2 >KIR:KIR00395 KIR2DL5B0080102 1128 bp 2 >KIR:KIR01207 KIR2DL5B0390101 1128 bp 2 >KIR:KIR01203 KIR2DL5B0390102 1128 bp

Colin

dominicbarkerAN commented 3 weeks ago

Thank you for bringing this issue to our attention, this has now been updated in the Latest and 2130 branch