muschellij2
commented
7 years ago Install ITKR?
John
On Wed, Jul 19, 2017 at 7:36 PM, dorianps notifications@github.com wrote:
What might be the solution to this?
R CMD INSTALL ANTsRCore
- installing to library ‘/home/dp/R/x86_64-pc-linux-gnu-library/3.3’
- installing source package ‘ANTsRCore’ ... linux-gnu 0 Cloning into 'ants'... remote: Counting objects: 20425, done. remote: Compressing objects: 100% (5/5), done. remote: Total 20425 (delta 3), reused 8 (delta 3), pack-reused 20417 Receiving objects: 100% (20425/20425), 18.81 MiB | 3.53 MiB/s, done. Resolving deltas: 100% (14030/14030), done. Checking connectivity... done. Already on 'master' Your branch is up-to-date with 'origin/master'. Already up-to-date. Note: checking out '6bc3e652d7628b428896ddaec837248a61d2af3b'.
You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example:
git checkout -b
HEAD is now at 6bc3e65... Merge pull request #459 from muschellij2/master -- The C compiler identification is GNU 5.4.0 -- The CXX compiler identification is GNU 5.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test C_HAS_WARNING-Wno-uninitialized -- Performing Test C_HAS_WARNING-Wno-uninitialized - Success -- Performing Test C_HAS_WARNING-Wno-unused-parameter -- Performing Test C_HAS_WARNING-Wno-unused-parameter - Success -- Performing Test C_HAS_WARNING-Wall -- Performing Test C_HAS_WARNING-Wall - Success -- Performing Test C_HAS_WARNING-Wcast-align -- Performing Test C_HAS_WARNING-Wcast-align - Success -- Performing Test C_HAS_WARNING-Wdisabled-optimization -- Performing Test C_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test C_HAS_WARNING-Wextra -- Performing Test C_HAS_WARNING-Wextra - Success -- Performing Test C_HAS_WARNING-Wformat=2 -- Performing Test C_HAS_WARNING-Wformat=2 - Success -- Performing Test C_HAS_WARNING-Winvalid-pch -- Performing Test C_HAS_WARNING-Winvalid-pch - Success -- Performing Test C_HAS_WARNING-Wno-format-nonliteral -- Performing Test C_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test C_HAS_WARNING-Wpointer-arith -- Performing Test C_HAS_WARNING-Wpointer-arith - Success -- Performing Test C_HAS_WARNING-Wshadow -- Performing Test C_HAS_WARNING-Wshadow - Success -- Performing Test C_HAS_WARNING-Wunused -- Performing Test C_HAS_WARNING-Wunused - Success -- Performing Test C_HAS_WARNING-Wwrite-strings -- Performing Test C_HAS_WARNING-Wwrite-strings - Success -- Performing Test C_HAS_WARNING-funit-at-a-time -- Performing Test C_HAS_WARNING-funit-at-a-time - Success -- Performing Test C_HAS_WARNING-Wno-strict-overflow -- Performing Test C_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wall -- Performing Test CXX_HAS_WARNING-Wall - Success -- Performing Test CXX_HAS_WARNING-Wcast-align -- Performing Test CXX_HAS_WARNING-Wcast-align - Success -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test CXX_HAS_WARNING-Wextra -- Performing Test CXX_HAS_WARNING-Wextra - Success -- Performing Test CXX_HAS_WARNING-Wformat=2 -- Performing Test CXX_HAS_WARNING-Wformat=2 - Success -- Performing Test CXX_HAS_WARNING-Winvalid-pch -- Performing Test CXX_HAS_WARNING-Winvalid-pch - Success -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test CXX_HAS_WARNING-Wpointer-arith -- Performing Test CXX_HAS_WARNING-Wpointer-arith - Success -- Performing Test CXX_HAS_WARNING-Wshadow -- Performing Test CXX_HAS_WARNING-Wshadow - Success -- Performing Test CXX_HAS_WARNING-Wunused -- Performing Test CXX_HAS_WARNING-Wunused - Success -- Performing Test CXX_HAS_WARNING-Wwrite-strings -- Performing Test CXX_HAS_WARNING-Wwrite-strings - Success -- Performing Test CXX_HAS_WARNING-funit-at-a-time -- Performing Test CXX_HAS_WARNING-funit-at-a-time - Success -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wno-deprecated -- Performing Test CXX_HAS_WARNING-Wno-deprecated - Success -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof - Success -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual - Success -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel - Success -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG - Failed -- Found Git: /usr/bin/git (found version "2.7.4") -- SuperBuild - ANTS => Requires ITKv4, CMake Error at SuperBuild/External_ITKv4.cmake:31 (message): ITK_DIR variable is defined but corresponds to non-existing directory ([1]) Call Stack (most recent call first): CMake/SlicerMacroCheckExternalProjectDependency.cmake:69 (include) SuperBuild.cmake:205 (SlicerMacroCheckExternalProjectDependency) CMakeLists.txt:60 (include)
-- Configuring incomplete, errors occurred! See also "/mnt/c/Users/dp/ANTsRCore/src/antb/CMakeFiles/CMakeOutput.log". See also "/mnt/c/Users/dp/ANTsRCore/src/antb/CMakeFiles/CMakeError.log". ** libs Makevars:3: *** missing separator. Stop. ERROR: compilation failed for package ‘ANTsRCore’
- removing ‘/home/dp/R/x86_64-pc-linux-gnu-library/3.3/ANTsRCore’
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dorianps
cookpa
stnava
What might be the solution to this?