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ANTsX / ANTsR

R interface to the ANTs biomedical image processing library
https://antsx.github.io/ANTsR
Apache License 2.0
127 stars 35 forks source link

Travis fails for external package that relies on ANTsR #242

Closed dorianps closed 5 years ago

dorianps commented 5 years ago

I relied on a script built by @muschellij2 to preload ANTsR and test LESYMAP on Travis. It worked until a couple of months ago, and now it's failing. Has anything changed on the method to test packages that depend on ANTsR?

LESYMAP travis script: https://github.com/dorianps/LESYMAP/blob/master/.travis.yml

Error in Travis: https://travis-ci.org/dorianps/LESYMAP/jobs/449529957

The command "Rscript -e 'devtools::session_info(installed.packages()[, "Package"])'" failed and exited with 1 during .
muschellij2 commented 5 years ago

That is https://gist.githubusercontent.com/muschellij2/183aca6ea4d326db549cdcc28e1ff395/raw/ is pretty old.

No idea of why the errors are there. Tried some fixed and try again

Maybe ` John

On Thu, Nov 1, 2018 at 4:36 PM dorianps notifications@github.com wrote:

Hi @muschellij2 https://github.com/muschellij2

I relied on a script built by @muschellij2 https://github.com/muschellij2 to preload ANTsR and test LESYMAP on Travis. It worked until a couple of months ago, and now it's failing. Has anything changed on the method to test packages that depend on ANTsR?

LESYMAP travis script: https://github.com/dorianps/LESYMAP/blob/master/.travis.yml

Error in Travis: https://travis-ci.org/dorianps/LESYMAP/jobs/449529957

The command "Rscript -e 'devtools::session_info(installed.packages()[, "Package"])'" failed and exited with 1 during .

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ANTsX/ANTsR/issues/242, or mute the thread https://github.com/notifications/unsubscribe-auth/ABBnroLhKvyYAv5W2nRl_o5dWazRJRaPks5uq1tRgaJpZM4YJCjW .

muschellij2 commented 5 years ago

Also @stnava, ANTsR hasn't had a tagged release in a long time. John

On Thu, Nov 1, 2018 at 4:51 PM John Muschelli muschellij2@gmail.com wrote:

That is https://gist.githubusercontent.com/muschellij2/183aca6ea4d326db549cdcc28e1ff395/raw/ is pretty old.

No idea of why the errors are there. Tried some fixed and try again

Maybe ` John

On Thu, Nov 1, 2018 at 4:36 PM dorianps notifications@github.com wrote:

Hi @muschellij2 https://github.com/muschellij2

I relied on a script built by @muschellij2 https://github.com/muschellij2 to preload ANTsR and test LESYMAP on Travis. It worked until a couple of months ago, and now it's failing. Has anything changed on the method to test packages that depend on ANTsR?

LESYMAP travis script: https://github.com/dorianps/LESYMAP/blob/master/.travis.yml

Error in Travis: https://travis-ci.org/dorianps/LESYMAP/jobs/449529957

The command "Rscript -e 'devtools::session_info(installed.packages()[, "Package"])'" failed and exited with 1 during .

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ANTsX/ANTsR/issues/242, or mute the thread https://github.com/notifications/unsubscribe-auth/ABBnroLhKvyYAv5W2nRl_o5dWazRJRaPks5uq1tRgaJpZM4YJCjW .

muschellij2 commented 5 years ago

Works now (after bugs are fixed): https://travis-ci.org/muschellij2/LESYMAP/jobs/449551646

muschellij2 commented 5 years ago

@stnava @dorianps - this can be closed -correct?

dorianps commented 5 years ago

Yes, thank you for fixing. Closing.