Closed dorianps closed 4 years ago
Both links above are failed builds though. Not sure I follow the logic. Btw, trusty used to be fine for months, these failures have emerged more recently.
recent failures have to do with some work done by @ntustison which requires updated ITK ANTs etc - ie new releases. will get around to eventually.
I believe I addressed that recent work (simulated displacement fields) when I updated the git tag in ANTsRCore here. Could that be a cache issue?
Is that affecting the compiled builds used in Travis for downstream packages like lesymap, which seem to be hosted in neuroconductor? Maybe @muschellij2 knows the answer to this.
Installing ANTsRCore package binaries
--2020-05-06 04:11:45-- https://github.com/neuroconductor/ANTsRCore/releases/download/0.7.4.nc4080/ANTsRCore_0.7.4_R_x86_64-pc-linux-gnu_R3.6.tar.gz
Resolving github.com (github.com)... 140.82.112.3
@ntustison did we update the releases? if not then that's one issue ... a 2nd could require cache clearing
Oh, then yeah, I didn't ever do anything with releases so then that would be a problem.
So it depends on what you're pulling from - either neuroc or the ANTsR repo. If this doesn't work with Neuroc version, then need to update the neuroc version by new submission Best, John
On Thu, May 7, 2020 at 3:15 PM dorianps notifications@github.com wrote:
Is that affecting the compiled builds used in Travis for downstream packages like lesymap, which seem to be hosted in neuroconductor? Maybe @muschellij2 https://github.com/muschellij2 knows the answer to this.
Installing ANTsRCore package binaries --2020-05-06 04:11:45-- https://github.com/neuroconductor/ANTsRCore/releases/download/0.7.4.nc4080/ANTsRCore_0.7.4_R_x86_64-pc-linux-gnu_R3.6.tar.gz Resolving github.com (github.com)... 140.82.112.3
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/ANTsX/ANTsR/issues/313#issuecomment-625445580, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAIGPLXUUOFASN2ZVF4EGZ3RQMCD7ANCNFSM4M3QFPGQ .
@muschellij2 I just rely on your script to get ANTsR/Core on travis before installing lesymap/linda, and that gets the binaries from neurocnductor. It is usually sufficient, but I am always of the idea that the script that installs ANTsR from binaries for travis testing should be a feature ANTsR has itself in the repository. Unfortunately, I can't contribute with something like it anytime soon, just putting out a thought for the other devs.
probably resolved as of the numerous commits this morning --- but still waiting to see
@ntustison @dorianps looks like we are good now re: antsrnet linda etc ... pls close if you agree
Thanks @stnava . On my packages I still have failures, but it might be because of neuroconductor being behind. Can you please push a commit with the word submit_package_release
in it so Neuroconductor picks it up automatically?
Thanks @stnava. ANTsRNet is now green.
Had to switch to Xenial for linux to go green, but it works now. Closing.
I suggest someone pushes an empty commit with submit_package_release
for neuroconductor to pick up the new release.
Describe the bug Travis is failing for my downstream packages LESYMAP/LINDA. I am trying to find out why, but the log is not telling much at first glance: https://api.travis-ci.org/v3/job/683673823/log.txt . Looks like ANTsR/Core binaries are being installed but not seen. Looks also like ANTsR has its own problems with failing on Travis.
Any idea how to fix the issues? My travis script relies on http://bit.ly/antsr_travis_sh maintained by @muschellij2.
To Reproduce NA
Expected behavior Travis pass.
Screenshots
Desktop (please complete the following information): NA
Smartphone (please complete the following information): NA
Additional context ANTsR was successful on Travis until 3 weeks ago. Note also, official release version of R is now 4.0.0, not 3.* anymore.