Closed prateeksasan1 closed 4 years ago
This really is not specific enough information...
You can check the Travis builds to see if there’s any indication of issues.
On Mon, Aug 17, 2020 at 3:41 PM Prateek Sasan notifications@github.com wrote:
Installing the latest ANTsR and ANTsRCore is failing on university server. the latest version of cmake(v 3.17.2) is present and i am using R 3.6. Can you tell me the last stable version of the two packages. i just have to do basic image transformation, registration etc.
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brian
Please find below the error i got when i tried to download ANTsRCore in R 4.0.2.
Error: package or namespace load failed for ‘ANTsRCore’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/users/PAS1316/prateeksasan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ANTsRCore/00new/ANTsRCore/libs/ANTsRCore.so': /users/PAS1316/prateeksasan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ANTsRCore/00new/ANTsRCore/libs/ANTsRCore.so: undefined symbol: _ZN4ants16antsRegistrationESt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EEPSo
this means you've done something wrong on your end.
please clean up ITKR, ANTsRCore and ANTsR and restart from scratch following one of the methods described here:
https://github.com/ANTsX/ANTsR#installation-from-source
brian
On Wed, Aug 19, 2020 at 12:04 PM Prateek Sasan notifications@github.com wrote:
Please find below the error i got when i tried to download ANTsRCore in R 4.0.2.
Error: package or namespace load failed for ‘ANTsRCore’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/users/PAS1316/prateeksasan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ANTsRCore/00new/ANTsRCore/libs/ANTsRCore.so': /users/PAS1316/prateeksasan/R/x86_64-pc-linux-gnu-library/4.0/00LOCK-ANTsRCore/00new/ANTsRCore/libs/ANTsRCore.so: undefined symbol: _ZN4ants16antsRegistrationESt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS6_EEPSo
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I tried and got the same error. do you think the version of cmake or the fact that i am trying to install it on OSC can cause such an issue?
certainly, details matter. your issue is a linking/symbols definition which has to do with your compiler/linker. not something we can do anything about on our end. you might just want to follow the .travis.yml examples in terms of system setup or just use the docker container.
Installing the latest ANTsR and ANTsRCore is failing on university server. the latest version of cmake(v 3.17.2) is present and i am using R 3.6. Can you tell me the last stable version of the two packages. i just have to do basic image transformation, registration etc.