Closed muschellij2 closed 5 years ago
Describe the bug labelClusters doesn't perform well on unsigned chars. This is really a bug in thresholdImage:
labelClusters
thresholdImage
library(ANTsRCore) #> #> Attaching package: 'ANTsRCore' #> The following object is masked from 'package:stats': #> #> var #> The following objects are masked from 'package:base': #> #> all, any, apply, max, min, prod, range, sum minThresh = 1e-06 maxThresh = 1 fullyConnected = FALSE imagein<-makeImage( c(40,10,10 ) , rnorm(40*10*10)) imagein = check_ants(imagein) dim <- imagein@dimension clust <- thresholdImage(imagein > 1, minThresh, 0.99) sum(clust) #> [1] 0 clust <- thresholdImage(antsImageClone(imagein > 1, out_pixeltype = "float"), minThresh, maxThresh) sum(clust) #> [1] 620 sum(imagein > 0) #> [1] 2034 cc = labelClusters(imagein > 0) sum(cc) #> [1] 0 cc #> antsImage #> Pixel Type : unsigned char #> Components Per Pixel: 1 #> Dimensions : 40x10x10 #> Voxel Spacing : 1x1x1 #> Origin : 0 0 0 #> Direction : 1 0 0 0 1 0 0 0 1 cc2 = labelClusters(antsImageClone(imagein > 0, out_pixeltype = "float")) sum(cc2) #> [1] 1964 cc2 #> antsImage #> Pixel Type : float #> Components Per Pixel: 1 #> Dimensions : 40x10x10 #> Voxel Spacing : 1x1x1 #> Origin : 0 0 0 #> Direction : 1 0 0 0 1 0 0 0 1
Created on 2019-06-06 by the reprex package (v0.2.1)
Describe the bug
labelClusters
doesn't perform well on unsigned chars. This is really a bug inthresholdImage
:Created on 2019-06-06 by the reprex package (v0.2.1)