Closed forrestw2005 closed 5 years ago
stnava
commented
5 years ago can't reproduce on my end + ANTs builds appear ok https://travis-ci.org/ANTsX/ANTs/builds/594243675 so not sure what this is. @muschellij2 I know you saw this as well but I have no insights into the cause at this point.
forrestw2005
commented
5 years ago @stnava I also tried another method, and got the same error info.
forrestw2005
commented
5 years ago I attached the system info, and hope this will help solving the problem.
sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.3 LTS
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
Random number generation: RNG: Mersenne-Twister Normal: Inversion Sample: Rounding
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.2 ps_1.3.0 prettyunits_1.0.2 rprojroot_1.3-2
[5] digest_0.6.21 crayon_1.3.4 withr_2.1.2 assertthat_0.2.1
[9] R6_2.4.0 backports_1.1.5 magrittr_1.5 rlang_0.4.0
[13] cli_1.1.0 curl_4.2 fs_1.3.1 remotes_2.1.0
[17] testthat_2.2.1 callr_3.3.2 ellipsis_0.3.0 desc_1.2.0
[21] devtools_2.2.1 tools_3.6.1 glue_1.3.1 pkgload_1.0.2
[25] compiler_3.6.1 processx_3.4.1 pkgbuild_1.0.5 sessioninfo_1.1.1
[29] memoise_1.1.0 usethis_1.5.1
stnava
commented
5 years ago see https://github.com/ANTsX/ANTsRCore/issues/97
brian
On Mon, Oct 7, 2019 at 9:17 PM forrestw2005 notifications@github.com wrote:
I attached the system info, and hope this will help solving the problem.
sessionInfo() R version 3.6.1 (2019-07-05) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.3 LTS
Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/libopenblasp-r0.2.20.so
Random number generation: RNG: Mersenne-Twister Normal: Inversion Sample: Rounding
locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages: [1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached): [1] Rcpp_1.0.2 ps_1.3.0 prettyunits_1.0.2 rprojroot_1.3-2 [5] digest_0.6.21 crayon_1.3.4 withr_2.1.2 assertthat_0.2.1 [9] R6_2.4.0 backports_1.1.5 magrittr_1.5 rlang_0.4.0 [13] cli_1.1.0 curl_4.2 fs_1.3.1 remotes_2.1.0 [17] testthat_2.2.1 callr_3.3.2 ellipsis_0.3.0 desc_1.2.0 [21] devtools_2.2.1 tools_3.6.1 glue_1.3.1 pkgload_1.0.2 [25] compiler_3.6.1 processx_3.4.1 pkgbuild_1.0.5 sessioninfo_1.1.1 [29] memoise_1.1.0 usethis_1.5.1
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forrestw2005
commented
5 years ago mine is "cmake version 3.10.2"
muschellij2
commented
5 years ago cmake version 3.12.3 - I will upgrade an retry, but doubtful this is it. Best, John
On Mon, Oct 7, 2019 at 9:44 PM forrestw2005 notifications@github.com wrote:
mine is "cmake version 3.10.2"
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forrestw2005
commented
5 years ago thanks John~ waiting for the solution~
forrestw2005
commented
5 years ago any solution? just trying cmake version 3.12.3? @stnava @muschellij2
stnava
commented
5 years ago Use r cmd install
On Fri, Oct 11, 2019 at 9:27 AM forrestw2005 notifications@github.com wrote:
any solution? just trying cmake version 3.12.3? @stnava https://github.com/stnava @muschellij2 https://github.com/muschellij2
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brian
forrestw2005
commented
5 years ago @stnava I did it and it showed the same error. I will try one more time today.
muschellij2
commented
5 years ago library(git2r)
if (!requireNamespace("ITKR", quietly = TRUE)) {
remotes::install_github("stnava/ITKR")
}
url = "https://github.com/ANTsX/ANTsRCore"
local_path = file.path(tempdir(), "ANTsRCore")
git2r::clone(url = url, local_path = local_path)
devtools::install(local_path, upgrade = FALSE)That does not work. The install command does the standard build (aka creates a tarball), but you can try:
# devtools::install(local_path, upgrade = FALSE)
cmd = paste("R CMD INSTALL", local_path)
system(cmd)after i downloaded the source code, using the method, no working again.
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From: John Muschelli notifications@github.com Sent: Friday, October 11, 2019 11:45:52 AM To: stnava/ITKR ITKR@noreply.github.com Cc: forrestw2005 forrestw2005@hotmail.com; Author author@noreply.github.com Subject: Re: [stnava/ITKR] AntsR install (#44)
That does not work. The install command does the standard build (aka creates a tarball), but you can try:
cmd = paste("R CMD INSTALL", local_path) system(cmd)
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muschellij2
commented
5 years ago Using cmd = paste("R CMD INSTALL", local_path) worked for me (but again is not optimal at all, especially for remotes::install_github
forrestw2005
commented
5 years ago @muschellij2 update: I installed the ANTsrCore and ANTsR with git clong.........for both , then R INSTALL ...; after that I tried the function print(antsGetPixels(img, 50,60,44) from the document , it said cannot find the function antsgetpixels, any idea? Do i complete installing the ANTsR?
muschellij2
commented
5 years ago This was to install ANTsRCore not ANTsR. Could you read in an image using antsImageRead
On Fri, Oct 11, 2019 at 3:14 PM forrestw2005 notifications@github.com wrote:
@muschellij2 https://github.com/muschellij2 update: I installed the ANTsrCore and ANTsR with git clong.........for both , then R INSTALL ...; after that I tried the function print(antsGetPixels(img, 50,60,44) from the document , it said cannot find the function antsgetpixels, any idea? Do i complete installing the ANTsR?
— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/stnava/ITKR/issues/44?email_source=notifications&email_token=AAIGPLV3HBT5PJ7X7WOC3FTQODF7RA5CNFSM4I6LNZX2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEBA6NZY#issuecomment-541189863, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAIGPLWYCO4F5X6L4JCQ6J3QODF7RANCNFSM4I6LNZXQ .
-- Best, John
forrestw2005
commented
5 years ago @muschellij2 yes, I can.
Please help~ when installing ANtsR, I got the following error, any solution to it?
Installing package into ‘/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6’ (as ‘lib’ is unspecified)
You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by performing another checkout.
If you want to create a new branch to retain commits you create, you may do so (now or later) by using -b with the checkout command again. Example:
git checkout -b
HEAD is now at 554b6969 Merge branch 'master' of https://github.com/ANTsX/ANTs ... -- The C compiler identification is GNU 7.4.0 -- The CXX compiler identification is GNU 7.4.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using CCache -- Performing Test C_HAS_WARNING-Wno-uninitialized -- Performing Test C_HAS_WARNING-Wno-uninitialized - Success -- Performing Test C_HAS_WARNING-Wno-unused-parameter -- Performing Test C_HAS_WARNING-Wno-unused-parameter - Success -- Performing Test C_HAS_WARNING-Wall -- Performing Test C_HAS_WARNING-Wall - Success -- Performing Test C_HAS_WARNING-Wno-long-double -- Performing Test C_HAS_WARNING-Wno-long-double - Failed -- Performing Test C_HAS_WARNING-Wcast-align -- Performing Test C_HAS_WARNING-Wcast-align - Success -- Performing Test C_HAS_WARNING-Wdisabled-optimization -- Performing Test C_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test C_HAS_WARNING-Wextra -- Performing Test C_HAS_WARNING-Wextra - Success -- Performing Test C_HAS_WARNING-Wformat_2 -- Performing Test C_HAS_WARNING-Wformat_2 - Success -- Performing Test C_HAS_WARNING-Winvalid-pch -- Performing Test C_HAS_WARNING-Winvalid-pch - Success -- Performing Test C_HAS_WARNING-Wno-format-nonliteral -- Performing Test C_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test C_HAS_WARNING-Wpointer-arith -- Performing Test C_HAS_WARNING-Wpointer-arith - Success -- Performing Test C_HAS_WARNING-Wshadow -- Performing Test C_HAS_WARNING-Wshadow - Success -- Performing Test C_HAS_WARNING-Wunused -- Performing Test C_HAS_WARNING-Wunused - Success -- Performing Test C_HAS_WARNING-Wwrite-strings -- Performing Test C_HAS_WARNING-Wwrite-strings - Success -- Performing Test C_HAS_WARNING-funit-at-a-time -- Performing Test C_HAS_WARNING-funit-at-a-time - Success -- Performing Test C_HAS_WARNING-Wno-strict-overflow -- Performing Test C_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wall -- Performing Test CXX_HAS_WARNING-Wall - Success -- Performing Test CXX_HAS_WARNING-Wno-long-double -- Performing Test CXX_HAS_WARNING-Wno-long-double - Failed -- Performing Test CXX_HAS_WARNING-Wcast-align -- Performing Test CXX_HAS_WARNING-Wcast-align - Success -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test CXX_HAS_WARNING-Wextra -- Performing Test CXX_HAS_WARNING-Wextra - Success -- Performing Test CXX_HAS_WARNING-Wformat_2 -- Performing Test CXX_HAS_WARNING-Wformat_2 - Success -- Performing Test CXX_HAS_WARNING-Winvalid-pch -- Performing Test CXX_HAS_WARNING-Winvalid-pch - Success -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test CXX_HAS_WARNING-Wpointer-arith -- Performing Test CXX_HAS_WARNING-Wpointer-arith - Success -- Performing Test CXX_HAS_WARNING-Wshadow -- Performing Test CXX_HAS_WARNING-Wshadow - Success -- Performing Test CXX_HAS_WARNING-Wunused -- Performing Test CXX_HAS_WARNING-Wunused - Success -- Performing Test CXX_HAS_WARNING-Wwrite-strings -- Performing Test CXX_HAS_WARNING-Wwrite-strings - Success -- Performing Test CXX_HAS_WARNING-funit-at-a-time -- Performing Test CXX_HAS_WARNING-funit-at-a-time - Success -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wno-deprecated -- Performing Test CXX_HAS_WARNING-Wno-deprecated - Success -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof - Success -- Performing Test CXX_HAS_WARNING-Wno-undefined-var-template -- Performing Test CXX_HAS_WARNING-Wno-undefined-var-template - Failed -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual - Success -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel - Success -- Performing Test C_HAS_WARNING-mtune_native -- Performing Test C_HAS_WARNING-mtune_native - Success -- Performing Test C_HAS_WARNING-march_corei7 -- Performing Test C_HAS_WARNING-march_corei7 - Success -- Performing Test CXX_HAS_WARNING-mtune_native -- Performing Test CXX_HAS_WARNING-mtune_native - Success -- Performing Test CXX_HAS_WARNING-march_corei7 -- Performing Test CXX_HAS_WARNING-march_corei7 - Success -- Performing Test have_gold -- Performing Test have_gold - Success -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG - Failed -- Found Git: /usr/bin/git (found version "2.17.1") -- SuperBuild - ANTS => Requires ITKv5, -- SuperBuild - ITKv5[OK] -- SuperBuild - ANTS[OK] -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project:
-- Build files have been written to: /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb ** libs g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Atropos.cpp -o Atropos.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c DenoiseImage.cpp -o DenoiseImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c LabelClustersUniquely.cpp -o LabelClustersUniquely.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c N3BiasFieldCorrection.cpp -o N3BiasFieldCorrection.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c N4BiasFieldCorrection.cpp -o N4BiasFieldCorrection.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ThresholdImage.cpp -o ThresholdImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsApplyTransforms.cpp -o antsApplyTransforms.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsApplyTransformsToPoints.cpp -o antsApplyTransformsToPoints.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImage.cpp -o antsImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageArith.cpp -o antsImageArith.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageClone.cpp -o antsImageClone.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageComparison.cpp -o antsImageComparison.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageHeaderInfo.cpp -o antsImageHeaderInfo.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageIterator.cpp -o antsImageIterator.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageLogic.cpp -o antsImageLogic.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageMath.cpp -o antsImageMath.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageMutualInformation.cpp -o antsImageMutualInformation.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageRead.cpp -o antsImageRead.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageStats.cpp -o antsImageStats.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsImageWrite.cpp -o antsImageWrite.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsJointFusion.cpp -o antsJointFusion.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsMatrix.cpp -o antsMatrix.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsRegistration.cpp -o antsRegistration.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsrMetric.cpp -o antsrMetric.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsrTransform1.cpp -o antsrTransform1.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c antsrTransform2.cpp -o antsrTransform2.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cropImage.cpp -o cropImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dummy.cpp -o dummy.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iMathInterface.cpp -o iMathInterface.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iMathInterface1.cpp -o iMathInterface1.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c iMathInterface2.cpp -o iMathInterface2.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c imagesToMatrix.cpp -o imagesToMatrix.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.c -o init.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c labelStats.cpp -o labelStats.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c makeImage.cpp -o makeImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mergeChannels.cpp -o mergeChannels.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c patchAnalysis.cpp -o patchAnalysis.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c smoothImage.cpp -o smoothImage.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/libs/include/ITK-5.1/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Utilities -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ -I../inst/include/ -I/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Tensor/ -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/Rcpp/include" -I"/nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/ITKR/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-uuRxut/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c splitChannels.cpp -o splitChannels.o cd /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb && make -j 2 && cd /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build && make all install && rm -rf /nfshome/dwang/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-ANTsRCore/00new/ANTsRCore/libs/bin && cd /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src make[1]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' make[2]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' make[3]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' Scanning dependencies of target ITKv5 make[3]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' make[3]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' [ 5%] Creating directories for 'ITKv5' [ 11%] No download step for 'ITKv5' [ 17%] No patch step for 'ITKv5' [ 23%] No update step for 'ITKv5' [ 29%] No configure step for 'ITKv5' [ 35%] No build step for 'ITKv5' [ 41%] No install step for 'ITKv5' [ 47%] Completed 'ITKv5' make[3]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' [ 47%] Built target ITKv5 make[3]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' Scanning dependencies of target ANTS make[3]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' make[3]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' [ 52%] Creating directories for 'ANTS' [ 58%] No download step for 'ANTS' [ 70%] No update step for 'ANTS' [ 70%] No patch step for 'ANTS' [ 76%] Performing configure step for 'ANTS' Not searching for unused variables given on the command line. -- The CXX compiler identification is GNU 7.4.0 -- The C compiler identification is GNU 7.4.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Using CCache -- Performing Test C_HAS_WARNING-Wno-uninitialized -- Performing Test C_HAS_WARNING-Wno-uninitialized - Success -- Performing Test C_HAS_WARNING-Wno-unused-parameter -- Performing Test C_HAS_WARNING-Wno-unused-parameter - Success -- Performing Test C_HAS_WARNING-Wall -- Performing Test C_HAS_WARNING-Wall - Success -- Performing Test C_HAS_WARNING-Wno-long-double -- Performing Test C_HAS_WARNING-Wno-long-double - Failed -- Performing Test C_HAS_WARNING-Wcast-align -- Performing Test C_HAS_WARNING-Wcast-align - Success -- Performing Test C_HAS_WARNING-Wdisabled-optimization -- Performing Test C_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test C_HAS_WARNING-Wextra -- Performing Test C_HAS_WARNING-Wextra - Success -- Performing Test C_HAS_WARNING-Wformat_2 -- Performing Test C_HAS_WARNING-Wformat_2 - Success -- Performing Test C_HAS_WARNING-Winvalid-pch -- Performing Test C_HAS_WARNING-Winvalid-pch - Success -- Performing Test C_HAS_WARNING-Wno-format-nonliteral -- Performing Test C_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test C_HAS_WARNING-Wpointer-arith -- Performing Test C_HAS_WARNING-Wpointer-arith - Success -- Performing Test C_HAS_WARNING-Wshadow -- Performing Test C_HAS_WARNING-Wshadow - Success -- Performing Test C_HAS_WARNING-Wunused -- Performing Test C_HAS_WARNING-Wunused - Success -- Performing Test C_HAS_WARNING-Wwrite-strings -- Performing Test C_HAS_WARNING-Wwrite-strings - Success -- Performing Test C_HAS_WARNING-funit-at-a-time -- Performing Test C_HAS_WARNING-funit-at-a-time - Success -- Performing Test C_HAS_WARNING-Wno-strict-overflow -- Performing Test C_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wall -- Performing Test CXX_HAS_WARNING-Wall - Success -- Performing Test CXX_HAS_WARNING-Wno-long-double -- Performing Test CXX_HAS_WARNING-Wno-long-double - Failed -- Performing Test CXX_HAS_WARNING-Wcast-align -- Performing Test CXX_HAS_WARNING-Wcast-align - Success -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization -- Performing Test CXX_HAS_WARNING-Wdisabled-optimization - Success -- Performing Test CXX_HAS_WARNING-Wextra -- Performing Test CXX_HAS_WARNING-Wextra - Success -- Performing Test CXX_HAS_WARNING-Wformat_2 -- Performing Test CXX_HAS_WARNING-Wformat_2 - Success -- Performing Test CXX_HAS_WARNING-Winvalid-pch -- Performing Test CXX_HAS_WARNING-Winvalid-pch - Success -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral -- Performing Test CXX_HAS_WARNING-Wno-format-nonliteral - Success -- Performing Test CXX_HAS_WARNING-Wpointer-arith -- Performing Test CXX_HAS_WARNING-Wpointer-arith - Success -- Performing Test CXX_HAS_WARNING-Wshadow -- Performing Test CXX_HAS_WARNING-Wshadow - Success -- Performing Test CXX_HAS_WARNING-Wunused -- Performing Test CXX_HAS_WARNING-Wunused - Success -- Performing Test CXX_HAS_WARNING-Wwrite-strings -- Performing Test CXX_HAS_WARNING-Wwrite-strings - Success -- Performing Test CXX_HAS_WARNING-funit-at-a-time -- Performing Test CXX_HAS_WARNING-funit-at-a-time - Success -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow -- Performing Test CXX_HAS_WARNING-Wno-strict-overflow - Success -- Performing Test CXX_HAS_WARNING-Wno-deprecated -- Performing Test CXX_HAS_WARNING-Wno-deprecated - Success -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof -- Performing Test CXX_HAS_WARNING-Wno-invalid-offsetof - Success -- Performing Test CXX_HAS_WARNING-Wno-undefined-var-template -- Performing Test CXX_HAS_WARNING-Wno-undefined-var-template - Failed -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual -- Performing Test CXX_HAS_WARNING-Woverloaded-virtual - Success -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel -- Performing Test CXX_HAS_WARNING-Wstrict-null-sentinel - Success -- Performing Test C_HAS_WARNING-mtune_native -- Performing Test C_HAS_WARNING-mtune_native - Success -- Performing Test C_HAS_WARNING-march_corei7 -- Performing Test C_HAS_WARNING-march_corei7 - Success -- Performing Test CXX_HAS_WARNING-mtune_native -- Performing Test CXX_HAS_WARNING-mtune_native - Success -- Performing Test CXX_HAS_WARNING-march_corei7 -- Performing Test CXX_HAS_WARNING-march_corei7 - Success -- Performing Test have_gold -- Performing Test have_gold - Success -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG -- Performing Test CXX_HAS_DISABLE_OPTIMIZATION_FLAG - Failed -- Building ANTS version "" -- antsAffineInitializer -- antsJointFusion -- DenoiseImage -- SurfaceBasedSmoothing -- ThresholdImage -- ResampleImage -- sccan -- N4BiasFieldCorrection -- N3BiasFieldCorrection -- KellyKapowski -- antsRegistration -- antsMotionCorrStats -- antsMotionCorr -- antsApplyTransforms -- LabelGeometryMeasures -- LabelClustersUniquely -- Atropos -- antsApplyTransformsToPoints -- Configuring done -- Generating done -- Build files have been written to: /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build [ 82%] Performing forcebuild step for 'ANTS' [ 88%] Performing build step for 'ANTS' make[4]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' make[5]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' make[6]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' Scanning dependencies of target antsUtilities make[6]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' make[6]: Entering directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' [ 1%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsUtilities.cxx.o [ 2%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistrationTemplateHeader.cxx.o [ 3%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration2DDouble.cxx.o [ 4%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration2DFloat.cxx.o [ 5%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration3DDouble.cxx.o [ 6%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration3DFloat.cxx.o [ 7%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration4DDouble.cxx.o [ 8%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/antsRegistration4DFloat.cxx.o [ 10%] Building CXX object Examples/CMakeFiles/antsUtilities.dir//Utilities/ReadWriteData.cxx.o [ 11%] Building CXX object Examples/CMakeFiles/antsUtilities.dir//Utilities/antsCommandLineOption.cxx.o [ 12%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/__/Utilities/antsCommandLineParser.cxx.o [ 13%] Building CXX object Examples/CMakeFiles/antsUtilities.dir/ANTsVersion.cxx.o /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx: In static member function ‘static unsigned int ANTs::Version::MajorVersion()’: /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx:43:5: error: return-statement with no value, in function returning ‘unsigned int’ [-fpermissive] return ANTS_VERSION_MAJOR; ^
~/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx: In static member function ‘static unsigned int ANTs::Version::MinorVersion()’: /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx:47:5: error: return-statement with no value, in function returning ‘unsigned int’ [-fpermissive] return ANTS_VERSION_MINOR; ^~/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx: In static member function ‘static unsigned int ANTs::Version::PatchVersion()’: /tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/ants/Examples/ANTsVersion.cxx:51:5: error: return-statement with no value, in function returning ‘unsigned int’ [-fpermissive] return ANTS_VERSION_PATCH; ^~Examples/CMakeFiles/antsUtilities.dir/build.make:326: recipe for target 'Examples/CMakeFiles/antsUtilities.dir/ANTsVersion.cxx.o' failed make[6]: [Examples/CMakeFiles/antsUtilities.dir/ANTsVersion.cxx.o] Error 1 make[6]: Waiting for unfinished jobs.... make[6]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' CMakeFiles/Makefile2:759: recipe for target 'Examples/CMakeFiles/antsUtilities.dir/all' failed make[5]: [Examples/CMakeFiles/antsUtilities.dir/all] Error 2 make[5]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' Makefile:162: recipe for target 'all' failed make[4]: [all] Error 2 make[4]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb/ANTS-build' CMakeFiles/ANTS.dir/build.make:113: recipe for target 'ANTS-prefix/src/ANTS-stamp/ANTS-build' failed make[3]: [ANTS-prefix/src/ANTS-stamp/ANTS-build] Error 2 make[3]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' CMakeFiles/Makefile2:67: recipe for target 'CMakeFiles/ANTS.dir/all' failed make[2]: [CMakeFiles/ANTS.dir/all] Error 2 make[2]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' Makefile:116: recipe for target 'all' failed make[1]: [all] Error 2 make[1]: Leaving directory '/tmp/Rtmp1Sf1so/R.INSTALL99d6d6440bc/ANTsRCore/src/antb' Makevars:12: recipe for target 'libs' failed make: [libs] Error 2 ERROR: compilation failed for package ‘ANTsRCore’