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APAF-bioinformatics / ProteomeScholaR

GNU Lesser General Public License v3.0
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deAnalysisWrapperFunction does not accept group strings beginning with a number #57

Open Bucket-Chemist opened 1 day ago

Bucket-Chemist commented 1 day ago

eg

group: 2405_treat_rep1

error:

Error in parse(text = e[j]) : :1:5: unexpected input 1: 2405_ ^ 4. parse(text = e[j]) 3. makeContrasts(contrasts = contrast_strings, levels = colnames(design_m)) 2. runTestsContrasts(as.matrix(column_to_rownames(theObject@protein_quant_table, theObject@protein_id_column)), contrast_strings = contrasts_tbl[, 1][[1]], design_matrix = theObject@design_matrix, formula_string = formula_string, weights = NA, treat_lfc_cutoff = as.double(treat_lfc_cutoff), ... 1. deAnalysisWrapperFunction(ruv_normalised_for_de_analysis_obj, slice(contrasts_tbl, 5), formula_string = config_list$deAnalysisParameters$formula_string, de_q_val_thresh = config_list$deAnalysisParameters$de_q_val_thresh, treat_lfc_cutoff = config_list$deAnalysisParameters$treat_lfc_cutoff, ...

Bucket-Chemist commented 1 day ago

Issue fixed when adding an alphanumeric suffix

eg

crc2405_treat_rep1 works