prjemian
commented
5 years ago Probably we need to start the soft IOC that provides the PVs for the MONA support.
On Tue, Oct 9, 2018, 9:02 PM Francesco De Carlo notifications@github.com wrote:
I removed comment so I can use it back in ops. All works (hdf files are correct, including theta) except at the end of the scan I get the error below.
In [1]: RE(user_tomo_scan(acquire_time=0.01, iterations=3), comment="my tomo fly scan", sample="wood stick")
Total # of proj: 1500 Exposure Time: 0.01 s Readout Time: 0.004 s Angular Range: 180.0 degrees Camera X size: 1920 Blur Error: 0.00107424245552 pixels
Rot Speed: : 8.57142857131 degrees/s Scan Time:: 21.0000000003 s Frame Rate: 71.4285714275 fps
computed rotation speed: 8.571428571305242 degrees / s computed blur angle/image: 0.08571428571305242 degrees computed blur pixel/image: 0.001074242455501917 pixels iterations: 3 10 Darks, Shutter OFF 10 Flats, Shutter ON 2018-10-09 19:30:42.682081 taxi time: 5.200307369232178 s 0.00s - flying x = -0.0000 y = 5.0000 r = -36.8400 theta = 323.1600 image
0
5.01s - flying x = -0.0000 y = 5.0000 r = -26.5860 theta = 333.4140 image
0
8.63s - flying x = -0.0000 y = 5.0000 r = -0.7175 theta = 359.2825 image # 1 13.64s - flying x = -0.0000 y = 5.0000 r = 42.3805 theta = 42.3805 image # 359 18.65s - flying x = -0.0000 y = 5.0000 r = 85.1705 theta = 85.1705 image # 717 23.65s - flying x = -0.0000 y = 5.0000 r = 128.0045 theta = 128.0045 image
1074
28.66s - flying x = -0.0000 y = 5.0000 r = 171.8225 theta = 171.8225 image
1432
33.67s - flying x = -0.0000 y = 5.0000 r = 208.5165 theta = 208.5165 image
1500
38.21s - flying x = -0.0000 y = 5.0000 r = 216.7350 theta = 216.7350 image
1500
2018-10-09 19:31:20.957744 fly time: 38.21751523017883 s Adding /exchange/theta to /local/user2bmb/mona/2018/10/09/bfd675a4-864c-4874-a4b5_000000.h5
FailedStatus Traceback (most recent call last) ~/Apps/BlueSky/lib/python3.6/site-packages/bluesky/preprocessors.py in contingency_wrapper(plan, except_plan, else_plan, final_plan, pause_for_debug) 561 try: --> 562 ret = yield from plan 563 except GeneratorExit:
~/Apps/BlueSky/lib/python3.6/site-packages/bluesky/preprocessors.py in dec_inner(*inner_args, **inner_kwargs) 640 if cleanup: --> 641 yield from ensure_generator(final_plan_instance) 642 return ret
/home/beams8/USER2BMB/.ipython/profile_2bmb/startup/30-busy_fly_scan.py in cleanup() 183 # clear the stop flag --> 184 yield from bps.abs_set(mona.stop_acquisition, 0) 185
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https://github.com/APS-2BM-MIC/ipython-user2bmb/pull/52 Commit Summary
- enabled shutters for use with beam
File Changes
- M profile_2bmb/startup/20-signals.py https://github.com/APS-2BM-MIC/ipython-user2bmb/pull/52/files#diff-0 (8)
- M profile_2bmb/startup/30-busy_fly_scan.py https://github.com/APS-2BM-MIC/ipython-user2bmb/pull/52/files#diff-1 (8)
Patch Links:
- https://github.com/APS-2BM-MIC/ipython-user2bmb/pull/52.patch
- https://github.com/APS-2BM-MIC/ipython-user2bmb/pull/52.diff
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I removed comment so I can use it back in ops. All works (hdf files are correct, including theta) except at the end of the scan I get the error below.
In [1]: RE(user_tomo_scan(acquire_time=0.01, iterations=3), comment="my tomo fly scan", sample="wood stick")
Total # of proj: 1500 Exposure Time: 0.01 s Readout Time: 0.004 s Angular Range: 180.0 degrees Camera X size: 1920 Blur Error: 0.00107424245552 pixels
Rot Speed: : 8.57142857131 degrees/s Scan Time:: 21.0000000003 s Frame Rate: 71.4285714275 fps
computed rotation speed: 8.571428571305242 degrees / s computed blur angle/image: 0.08571428571305242 degrees computed blur pixel/image: 0.001074242455501917 pixels iterations: 3 10 Darks, Shutter OFF 10 Flats, Shutter ON
2018-10-09 19:30:42.682081 taxi time: 5.200307369232178 s
0.00s - flying x = -0.0000 y = 5.0000 r = -36.8400 theta = 323.1600 image # 0
5.01s - flying x = -0.0000 y = 5.0000 r = -26.5860 theta = 333.4140 image # 0 8.63s - flying x = -0.0000 y = 5.0000 r = -0.7175 theta = 359.2825 image # 1 13.64s - flying x = -0.0000 y = 5.0000 r = 42.3805 theta = 42.3805 image # 359 18.65s - flying x = -0.0000 y = 5.0000 r = 85.1705 theta = 85.1705 image # 717 23.65s - flying x = -0.0000 y = 5.0000 r = 128.0045 theta = 128.0045 image # 1074 28.66s - flying x = -0.0000 y = 5.0000 r = 171.8225 theta = 171.8225 image # 1432 33.67s - flying x = -0.0000 y = 5.0000 r = 208.5165 theta = 208.5165 image # 1500 38.21s - flying x = -0.0000 y = 5.0000 r = 216.7350 theta = 216.7350 image # 1500 2018-10-09 19:31:20.957744 fly time: 38.21751523017883 s Adding /exchange/theta to /local/user2bmb/mona/2018/10/09/bfd675a4-864c-4874-a4b5_000000.h5
FailedStatus Traceback (most recent call last) ~/Apps/BlueSky/lib/python3.6/site-packages/bluesky/preprocessors.py in contingency_wrapper(plan, except_plan, else_plan, final_plan, pause_for_debug) 561 try: --> 562 ret = yield from plan 563 except GeneratorExit:
~/Apps/BlueSky/lib/python3.6/site-packages/bluesky/preprocessors.py in dec_inner(*inner_args, **inner_kwargs) 640 if cleanup: --> 641 yield from ensure_generator(final_plan_instance) 642 return ret
/home/beams8/USER2BMB/.ipython/profile_2bmb/startup/30-busy_fly_scan.py in cleanup() 183 # clear the stop flag --> 184 yield from bps.abs_set(mona.stop_acquisition, 0) 185