Getting the unused argument error while running climpact Rscript

[farh-an]

Hello everyone,

I was trying to run the sample file of climpact for the historical and I got the error

error in create.indices.from.files(infiles, outdir, file.template, author.data, : unused arguments (root.dir = root.dir, ehfdef = EHF_DEF, wsdin_n = 5, csdin_n = 5, hddheatn_n = 18, cddcoldn_n = 18, gddgrown_n = 10, rxnday_n = 7, rnnmm_n = 30, ntxntn_n = 3, ntxbntnb_n = 3, project.lat2d.coords = TRUE) Execution halted

Could you please help me with how to solve this? Thanks in advance.

[farh-an]

Hi @heroldn,

I was trying to run the sample file of climpact for the historical and I got the error

error in create.indices.from.files(infiles, outdir, file.template, author.data, : unused arguments (root.dir = root.dir, ehfdef = EHF_DEF, wsdin_n = 5, csdin_n = 5, hddheatn_n = 18, cddcoldn_n = 18, gddgrown_n = 10, rxnday_n = 7, rnnmm_n = 30, ntxntn_n = 3, ntxbntnb_n = 3, project.lat2d.coords = TRUE) Execution halted

Please guide, thanks

Best, Farhan

[heroldn]

Hi, please let me know what command you're running, what version of R, and if it's the latest Climpact version.

[farh-an]

Hi @heroldn Rscript climpact.ncdf.wrapper.r R version 4.1.3 (2022-03-10) https://github.com/ARCCSS-extremes/climpact See the attached image below: Note: I am running this in Anaconda CMD.exe Prompt

[heroldn]

Ah right, gridded calculations are only supported on Linux https://github.com/ARCCSS-extremes/climpact.

On 12/09/2023 23:55 GMT farh-an @.***> wrote:

Hi @heroldn https://github.com/heroldn Rscript climpact.ncdf.wrapper.r R version 4.1.3 (2022-03-10) https://github.com/ARCCSS-extremes/climpact See the attached image below: [image] https://user-images.githubusercontent.com/74012816/267493732-ab144c87-ebb1-4358-bd44-78f3d57d02be.png Note: I am running this in Anaconda CMD.exe Prompt

— Reply to this email directly, view it on GitHub https://github.com/ARCCSS-extremes/climpact/issues/106#issuecomment-1716729760, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACW3FAK4H37G54YSIKQ6I5LX2DY6PANCNFSM6AAAAAA4T56NSE. You are receiving this because you were mentioned.Message ID: @.***>

[farh-an]

I also checked the installed packages and all of them were installed. See this image;

[farh-an]

Hi @heroldn, I know it works on Linux and I am running it on a Linux based system. I install ubuntu on the window subsystem for Linux

[heroldn]

Right, hmmm. You don't seem to have climdex.pcic.ncdf installed. Not sure why since the script seems to run fine for you. From the climpact root directory, in R, can you run install.packages("./server/pcic_packages/climdex.pcic.ncdf.climpact.tar.gz",repos=NULL,type="source")

Then try again.

[farh-an]

Hi @heroldn, The climdex.pcic.netcdf package is already installed but i still re-installed using the command you provided; see below image;

[farh-an]

After installing this i again run the command and got this error message;

[farh-an]

I try to install this library but it says that a version of this package might be somewhere else;

[heroldn]

Brilliant, yes that lmofit issue is in an upcoming merge. You've got a typo in your command, remove the bracket and should install.

[farh-an]

I remove the bracket and reinstall the lmofit library is installed but it gives me two warnings; Warning messages: 1: In install.packages("units") : installation of package 'units' had non-zero exit status 2: In install.packages("sf") : installation of package 'sf' had non-zero exit status

[farh-an]

Can you guide me on how to install or manually compile these two ("units" and "sf") dependencies?

[heroldn]

try 'yes' and if that doesn't work then 'no'.

[farh-an]

I try yes bit it did not work afterwards i type no it works well but when i again run the script i am getting an error message about spei calculation about its frequency which is 12 and about missing data values = NA

[farh-an]

How can I define in the Rscript that I do not want to calculate the spi and spei indices?

[farh-an]

Hi, @heroldn are these below calculation message are warnings or just part of indices calculations? see below image

[farh-an]

The lines in the above image are continuous and appear like a loop. I do not understand whether are these warnings or just normal calculation processes. Please guide me, Thanks

[farh-an]

The program just finished indices calculations with those lines shown in the above image. The command line looks like this;

[heroldn]

Those messages look harmless but are new, probably the latest update to the SPEI package caused it. I'll have to look into silencing them.

On 13/09/2023 01:45 GMT farh-an @.***> wrote:

The program just finished indices calculations with those lines shown in the above image. It cmd line looks like this; [image] https://user-images.githubusercontent.com/74012816/267507471-0892ecca-78a5-48d5-aad5-5848c03813a8.png

— Reply to this email directly, view it on GitHub https://github.com/ARCCSS-extremes/climpact/issues/106#issuecomment-1716809421, or unsubscribe https://github.com/notifications/unsubscribe-auth/ACW3FAKTXAJI3HEA4YBEMW3X2EF4ZANCNFSM6AAAAAA4T56NSE. You are receiving this because you were mentioned.Message ID: @.***>

[farh-an]

Hi @heroldn thank you for the guidance and quick support. I am closing this issue now. Thank you