When running SCILHS/i2p-transform, I get values like '1' and '2' in my Diagnosis table rather than 'P' or 'S'.
The following ...
select c_fullname, c_name, c_basecode, pcori_basecode
from "&&i2b2_meta_schema".pcornet_diag
where c_fullname like '\PCORI_MOD\PDX\%'
and c_name in ('Principal', 'Secondary', 'Unable to classify');`
...yields
\PCORI_MOD\PDX\S\ Secondary 2 2
\PCORI_MOD\PDX\X\ Unable to classify 0 0
\PCORI_MOD\PDX\P\ Principal DiagObs:PRIMARY_DX_YN 1
jklann
commented
8 years ago
The PCORI_BASECODE values are inconsistent with the [CDM v3 specification](http://www.pcornet.org/wp-content/uploads/2014/07/2015-07-29-PCORnet-Common-Data-Model-v3dot0-RELEASE.pdf] for "Principal", "Secondary", and "Unable to classify" for the principal discharge diagnosis flag %28PDX).
When running SCILHS/i2p-transform, I get values like '1' and '2' in my Diagnosis table rather than 'P' or 'S'.
The following ...
...yields