ARCH-commons / i2p-transform

i2b2 to PCORnet Common Data Model Transformation - requires i2b2 PCORnet ontology
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lab transform not correctly ignoring SNOMED codes #73

Open jklann opened 6 years ago

jklann commented 6 years ago

The lab transform does not yet support the SNOMED codes in the hierarchy, but rather than ignoring them it inserts truncated SNOMED codes with a LAB_PX_TYPE of 'LC', which will cause the EDC report to potentially produce errors.

I am not aware of sites using SNOMED codes for labs so not marking as high-priority.