ARGA-Genomes / arga-data

ARGA
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Script cleanup and ncbi processing additions #28

Closed christopher-mangion closed 1 year ago

christopher-mangion commented 2 years ago

Delete old ENAIngest.py (now ingest differently) Delete old generateMapping.py (now generateDwCMapping.py) Added new createDwC.py for creating darwin core files from csvs Added new downloadData.py for easy downloading of data using source structure Added new getDwCExamples.py for getting dwc field examples from all generated dwc files Updated helperFunctions.py source constructor function Updated xmlProcess.py to better handle layers of nested data Added many specific ncbi related scripts for taxonomy, biocollections, and filtering taxon IDs