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ARM-DOE / pyart

The Python-ARM Radar Toolkit. A data model driven interactive toolkit for working with weather radar data.
https://arm-doe.github.io/pyart/
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install error #859

Closed cycle13 closed 4 years ago

cycle13 commented 5 years ago

I try to install pyart package in os with gcc-9. There occur an error when the compile the c program. I paste the information in following, could you give some hint? Thank you so much. ....... building extension "io._sigmetfile" sources building extension "io.nexrad_interpolate" sources building data_files sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler sh: line 1: 10235 Segmentation fault: 11 'gcc' --version 2> /dev/null > '/var/folders/0f/2ky54s2j77sf0ynpdhy_3x1w0000gn/T/tmpfdq4at31' customize UnixCCompiler using build_ext building 'io._sigmetfile' extension compiling C sources C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64

compile options: '-I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c' gcc: ./_sigmetfile.c error: Command "gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64 -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c ./_sigmetfile.c -o build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o -MMD -MF build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o.d" failed with exit status -11

scollis commented 5 years ago

What platform?

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On Jul 30, 2019, at 9:29 PM, cycle13 notifications@github.com wrote:

I try to install pyart package in os with gcc-9. There occur an error when the compile the c program. I paste the information in following, could you give some hint? Thank you so much. ....... building extension "io._sigmetfile" sources building extension "io.nexrad_interpolate" sources building data_files sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler sh: line 1: 10235 Segmentation fault: 11 'gcc' --version 2> /dev/null > '/var/folders/0f/2ky54s2j77sf0ynpdhy_3x1w0000gn/T/tmpfdq4at31' customize UnixCCompiler using build_ext building 'io._sigmetfile' extension compiling C sources C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64

compile options: '-I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c' gcc: ./_sigmetfile.c error: Command "gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64 -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c ./_sigmetfile.c -o build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o -MMD -MF build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o.d" failed with exit status -11

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scollis commented 5 years ago

Just about to go to bed, but did you install conda compilers https://anaconda.org/conda-forge/compilers

-sent from a mobile device-

On Jul 30, 2019, at 9:29 PM, cycle13 notifications@github.com wrote:

I try to install pyart package in os with gcc-9. There occur an error when the compile the c program. I paste the information in following, could you give some hint? Thank you so much. ....... building extension "io._sigmetfile" sources building extension "io.nexrad_interpolate" sources building data_files sources build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler sh: line 1: 10235 Segmentation fault: 11 'gcc' --version 2> /dev/null > '/var/folders/0f/2ky54s2j77sf0ynpdhy_3x1w0000gn/T/tmpfdq4at31' customize UnixCCompiler using build_ext building 'io._sigmetfile' extension compiling C sources C compiler: gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64

compile options: '-I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c' gcc: ./_sigmetfile.c error: Command "gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I//anaconda3/include -arch x86_64 -I//anaconda3/include -arch x86_64 -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/lib/python3.7/site-packages/numpy/core/include -I//anaconda3/include/python3.7m -c ./_sigmetfile.c -o build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o -MMD -MF build/temp.macosx-10.7-x86_64-3.7/_sigmetfile.o.d" failed with exit status -11

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zssherman commented 5 years ago

@cycle13 Yeah I think it's a compiler issue too. It wouldn't hurt to update cython too, but I would try the compiler in the link @scollis gave.

zssherman commented 5 years ago

@cycle13 Are you still having issues? If not I'll probably close this issue.

zssherman commented 4 years ago

Closing for now, can be reopened if needed.