UOSL: no "D3_mother_child_ids.RData" output

[LAMaglan]

I see in a recent commit that this was added to https://github.com/ARS-toscana/ConcePTIONAlgorithmPregnancies/blob/version_4.2.1/p_parameters_pregnancy/01_prompts/01_prompts_UOSL.R

meaning_of_relationship_child[["UOSL"]] <- list("gestational_mother")

If this is based on values from the PERSON_RELATIONSHIPS table (meaning_of_relationship), then it should be "birth_mother", not "gestational_mother". In PERSON_RELATIONSHIPS, we only have "birth_mother" and "undefined_parent"

[OlgaPaoletti]

We set this meaning based on your ETL document but if it is not correct please change the meaning to "birth_mother" and rerun. This should solve the problem. If the problem is solved and you see the output table in the g_output, then you can download the new DP2 release from: https://github.com/IMI-ConcePTION/DP2_SSRI-SNRI/releases/tag/DP2_v1.0

[LAMaglan]

I will have to check with the colleagues in UOSL who wrote the ETL document and performed the ETL. So I relay the information properly, is it correct that :

meaning_of_relationship_child[["UOSL"]] <- list(<input value here>)

is based on the relevant value from "meaning_of_relationship" in PERSON_RELATIONSHIPS?

[OlgaPaoletti]

You have to fill in the list with the meaning identifying the mother in the PERSON_RELATIONSHIPS table. In some DAPs the meaning is "gestational_mother" in others is "birth_mother". You should check in your istance which one of the 2 is in your case

[LAMaglan]

@GiorgioLimoncella New problem: it turns out that the set of scripts posted here https://github.com/ARS-toscana/ConcePTIONAlgorithmPregnancies/releases/tag/release_4.2.1 did not actually include the change to UOSL (adding meaning_of_relationship_child to https://github.com/ARS-toscana/ConcePTIONAlgorithmPregnancies/blob/version_4.2.1/p_parameters_pregnancy/01_prompts/01_prompts_UOSL.R ) After downloading from the "main" page https://github.com/ARS-toscana/ConcePTIONAlgorithmPregnancies , this change is included. Now, I have changed it from "gestational_mother" to "birth_mother" (after talking with those in UOSL that have created the CDM tables) However, when running this, I get the error that the object meaning_of_relationship_child does not exist (see screenshot).