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ARTbio / GalaxyKickStart

Ansible playbooks for Galaxy Server deployment
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Debian - apt frequently crashes #242

Closed colindaven closed 7 years ago

colindaven commented 7 years ago

The ansible_module_apt.py on the Debian machine frequently freezes. Then you can't do anything with apt any more (error: fails to get a lock on the relevant apt files.

To solve this issue you can just kill the (crashed) ansible apt module:

ansible_module_apt.py

Otherwise, restarting the machine helps of course.

E:Directory/var/lib/apt/lists/ cannot be locked. root@debiantest:/galaxy_local/GalaxyKickStart# ps -aux | grep apt root 16966 6.6 1.1 126952 70860 pts/2 S 12:11 0:03 /usr/bin/python /tmp/ansible_DD4XbB/ansible_module_apt.py root 17009 0.2 0.2 171056 13092 pts/2 S 12:11 0:00 /usr/lib/apt/methods/https root 17010 0.1 0.0 38924 5008 pts/2 S 12:11 0:00 /usr/lib/apt/methods/http root 17011 0.0 0.0 38924 4880 pts/2 S 12:11 0:00 /usr/lib/apt/methods/http root 17012 0.1 0.0 38924 4872 pts/2 S 12:11 0:00 /usr/lib/apt/methods/http root 17015 0.1 0.0 28260 4296 pts/2 S 12:11 0:00 /usr/lib/apt/methods/gpgv root 17021 13.0 0.0 28248 4312 pts/2 S 12:11 0:02 /usr/lib/apt/methods/copy root 17028 0.1 0.0 28252 4544 pts/2 S 12:11 0:00 /usr/lib/apt/methods/bzip2 root 17032 0.0 0.0 12748 2108 pts/2 S+ 12:11 0:00 grep apt

drosofff commented 7 years ago

@colindaven Is there anything we can do upstream ?

colindaven commented 7 years ago

Nope. We'll test further on more debian machines. Might be helpful for other users though.