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ASAP-CRN
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harmonized-wf-dev
Repo for testing and developing a common postmortem-derived brain sequencing (PMDBS) workflow harmonized across ASAP
Apache License 2.0
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Add all intermediate artifacts to the curated buckets
#15
hkeward
closed
1 year ago
0
Ouptut PNG plots in addition to PDFs
#14
hkeward
closed
1 year ago
0
Allow group_by_vars to be configurable by the user
#13
hkeward
closed
1 year ago
0
Only store the latest successful run's data in the curated output bucket
#12
hkeward
closed
1 year ago
0
Remove future from process script
#11
hkeward
closed
1 year ago
0
Allow optional index files to be provided to cellranger
#10
hkeward
closed
1 year ago
0
Enable workflow to run cellranger alone if no batch information is provided
#9
hkeward
closed
1 year ago
0
Set resource requirements dynamically based on sample & file size
#8
hkeward
closed
1 year ago
1
Add workflow diagram
#7
hkeward
closed
1 year ago
0
Avoid out of memory error during cluster annotation
#6
hkeward
closed
1 year ago
0
Handle the situation where no cells are found for a sample
#5
hkeward
closed
1 year ago
0
Do not use future in doublet calling
#4
hkeward
closed
1 year ago
0
Dynamically scale memory for preprocess task
#3
hkeward
closed
1 year ago
0
Preprocess v0.0.1 and cohort analysis v0.0.1
#2
hkeward
closed
1 year ago
0
Initial WDL version of the harmony RNA workflow
#1
hkeward
closed
1 year ago
0
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