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ATOMScience-org / AMPL

The ATOM Modeling PipeLine (AMPL) is an open-source, modular, extensible software pipeline for building and sharing models to advance in silico drug discovery.
MIT License
136 stars 67 forks source link

Only add gpus if platform is set #362

Closed Kartstig closed 4 weeks ago

Kartstig commented 4 weeks ago

I was encountering the following error when running on a machine without a GPU:

docker run -p 8080:8080 \
  --gpus all \
        --hostname job-Gq8JzK80Zv77jJQFFzPBvY6Q.dnanexus.cloud \
        --privileged \
        -v /home/dnanexus/AMPL/../work/:/work/ kartstig/ampl:cpu-pfda \
        /bin/bash -l -c "jupyter-notebook --ip=0.0.0.0 --no-browser --allow-root --port=8080"
docker: Error response from daemon: failed to create shim task: OCI runtime create failed: runc create failed: unable to start container process: error during container init: error running hook #0: error running hook: exit status 1, stdout: , stderr: nvidia-container-cli: initialization error: driver error: failed to process request: unknown.
ERRO[0001] error waiting for container:                 
make: *** [Makefile:73: jupyter-notebook] Error 125