If a formatting error is raised for a bed file, the upload script should raise an error and not upload the sample rather than skipping the variants for that region:
INFO 2024-04-03 13:21:30.561680 import.py Uploading SNVs...
***** WARNING: File FILE.bed has inconsistent naming convention for record:
...
INFO 2024-04-03 13:21:30.600838 import.py Finished uploading SNVs successfully - added 0 variant(s)
If a formatting error is raised for a bed file, the upload script should raise an error and not upload the sample rather than skipping the variants for that region: