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AZCompTox / AZOrange

AstraZeneca add-ons to Orange.
GNU Lesser General Public License v3.0
22 stars 17 forks source link

install error #10

Closed iwatobipen closed 10 years ago

iwatobipen commented 11 years ago

Hi. I tried to install AZOrange in ubuntu 12.04 (32bit) . But setup.py was faild . And I got following message.

"in details.log"

    test -z "/home/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv" || /bin/mkdir -p "/home/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv"
     /usr/bin/install -c -m 644 **init**.py cv.py ml.py highgui.py adaptors.py matlab_syntax.py '/home/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv'
    /bin/bash: line 15: --destdir: command not foTraceback (most recent call last):
      File "setup.py", line 1165, in main
        self.__build()
      File "setup.py", line 199, in __build
        self.compileOpenCV()
      File "setup.py", line 969, in compileOpenCV
        checkStatus(stat, out,"Error installing opencv.")
      File "setup.py", line 26, in checkStatus
        sys.exit(1)
    SystemExit: 1
    und
    make[4]: **\* [install-pkgpyexecPYTHON] Error 127
    make[4]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    make[3]: *** [install-am] Error 2
    make[3]: Leaving directory`/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    make[2]: **\* [install-recursive] Error 1
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig'
    make[1]: *** [install-recursive] Error 1
    make[1]: Leaving directory`/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces'
    make: **\* [install-recursive] Error 1
    ++++++++++++++++++

    Error installing opencv.
    AZOrange is not built.

Are there ideas to solve the problem ? Please give me some advice. Thanks.

engpedrorafael commented 11 years ago

Hi,

Could you please provide the full files install.log and details.log? I would need those logs to further debug. Thanks.

iwatobipen commented 11 years ago

Dear. Thank you for your quick repry. I pasted install.log and details.log I successed to get all files. So I convered some setteings in setup.ini files "Yes" to "No" Best.

Takayuki

install.log

Log for AZOrange installation (Sat Jun 22 23:20:20 2013)

Setup Configuration:

Detail Code: OK_1371910820.02

Requirements and System Info (Sat Jun 22 23:20:20 2013)

/usr/include/python2.7 Linux ubuntu 3.2.0-48-generic-pae #74-Ubuntu SMP Thu Jun 6 20:05:01 UTC 2013 i686 i686 i386 GNU/Linux No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 12.04.2 LTS Release: 12.04

Codename: precise

Preparing Directories (Sat Jun 22 23:20:20 2013)

Detail Code: OK_1371910820.16

Not downloading ftm (Sat Jun 22 23:20:20 2013)

http://infosys.informatik.uni-mainz.de/research/azorange/structuralclustering-for-azorange/at_download/file (Sat Jun 22 23:20:20 2013)

Not downloading clustering (Sat Jun 22 23:20:20 2013)

Not downloading fminer (Sat Jun 22 23:20:20 2013)

Not downloading cinfony (Sat Jun 22 23:20:20 2013)

Not downloading rdkit (Sat Jun 22 23:20:20 2013)

Not downloading cdk (Sat Jun 22 23:20:20 2013)

Not downloading/unpacking orange (Sat Jun 22 23:20:20 2013)

Not downloading AppsPack (Sat Jun 22 23:20:20 2013)

Not downloading opencv (Sat Jun 22 23:20:20 2013)

Not downloading Boost (Sat Jun 22 23:20:20 2013)

Not downloading plearn (Sat Jun 22 23:20:20 2013)

Not downloading Oasa (Sat Jun 22 23:20:20 2013)

Compiling and Installing (Sat Jun 22 23:20:20 2013)

Copying from Trunk to build dir /home/iwatobipen/chemoinfo/AZOrange-0.5.5 -> /tmp/AZOBuildDir Detail Code: OK_1371910823.63 Detail Code: OK_1371910823.7 Detail Code: OK_1371910823.76 Compiling by running setup.py Installation will be to made to /home/iwatobipen/chemoinfo/AZOrange

ERROR: Detail Code: 256_1371912804.03

ERROR: Installation aborted! (Sat Jun 22 23:53:24 2013)

Finished (Sat Jun 22 23:53:24 2013)

The process spent 33 minutes

ERRORS during installation!!

Support FeedBack (Sat Jun 22 23:53:24 2013)

No emails specified for feedBack

details.log

Log for AZOrange installation (Sat Jun 22 23:20:20 2013)

Setup Configuration: Detail Code: OK_1371910820.02 [Repository] repointeraction=no repository=git@github.com:AZCompTox/AZOrange.git [Paths] builddir=/tmp/AZOBuildDir installdir=/home/iwatobipen/chemoinfo/AZOrange [Installation] installtype=system openinstallation=True precleanbuilddir=no precleaninstalldir=no cleaninstallcache=yes logfile=./install.log detailslogfile=./details.log templateprofilefile=./templateProfile templateprofilefilebash=./templateProfile.bash [Tests] runtestsafterinstall=yes testscript=runOpenTests.sh logfile=./tests.log detailslogfile=./testDetails.log [EnvVars] cflags=-fPIC include_dir=/usr/include/python2.7 pythonlib=/usr/lib/python2.7/config/libpython2.7.a python=/usr/bin/python2.7 [LocalSetupVars] python_ver=2.7 [Advanced] platformtype=workstation gccmoduleforappspackmpi=None [Dependencies] orange=https://bitbucket.org/biolab/orange,2.5a2 appspack=http://software.sandia.gov/appspack/downloads/appspack-5.0.1.tar.gz,5.0.1 boost=http://downloads.sourceforge.net/project/boost/boost/1.34.1/boost_1_34_1.tar.gz,1.34.1 opencv=http://downloads.sourceforge.net/project/opencvlibrary/opencv-unix/2.0/OpenCV-2.0.0.tar.bz2,2.0.0 plearn=http://svn.berlios.de/svnroot/repos/plearn/trunk,8124 cinfony=http://cinfony.googlecode.com/files/cinfony-1.0.tar.gz,1.0 rdkit=http://rdkit.googlecode.com/files/RDKit_2011_06_1.tgz,2011.06 cdk=http://switch.dl.sourceforge.net/project/cdk/cdk/1.2.7/cdk-1.2.7.jar,1.2.7 ftm=http://infosys.informatik.uni-mainz.de/research/azorange/ftm-for-azorange/at_download/file,0.1 fminer=https://github.com/amaunz/fminer2.git,0.0 clustering=http://infosys.informatik.uni-mainz.de/research/azorange/structuralclustering-for-azorange/at_download/file,1.1 [FeedBack] supportemails=

Requirements and System Info (Sat Jun 22 23:20:20 2013)

/usr/include/python2.7 Linux ubuntu 3.2.0-48-generic-pae #74-Ubuntu SMP Thu Jun 6 20:05:01 UTC 2013 i686 i686 i386 GNU/Linux No LSB modules are available. Distributor ID: Ubuntu Description: Ubuntu 12.04.2 LTS Release: 12.04

Codename: precise

Preparing Directories (Sat Jun 22 23:20:20 2013)

Detail Code: OK_1371910820.16

install - Output from command:

Not downloading ftm (Sat Jun 22 23:20:20 2013)

http://infosys.informatik.uni-mainz.de/research/azorange/structuralclustering-for-azorange/at_download/file (Sat Jun 22 23:20:20 2013)

Not downloading clustering (Sat Jun 22 23:20:20 2013)

Not downloading fminer (Sat Jun 22 23:20:20 2013)

Not downloading cinfony (Sat Jun 22 23:20:20 2013)

Not downloading rdkit (Sat Jun 22 23:20:20 2013)

Not downloading cdk (Sat Jun 22 23:20:20 2013)

Not downloading/unpacking orange (Sat Jun 22 23:20:20 2013)

Not downloading AppsPack (Sat Jun 22 23:20:20 2013)

Not downloading opencv (Sat Jun 22 23:20:20 2013)

Not downloading Boost (Sat Jun 22 23:20:20 2013)

Not downloading plearn (Sat Jun 22 23:20:20 2013)

Not downloading Oasa (Sat Jun 22 23:20:20 2013)

Compiling and Installing (Sat Jun 22 23:20:20 2013)

Copying from Trunk to build dir /home/iwatobipen/chemoinfo/AZOrange-0.5.5 -> /tmp/AZOBuildDir Detail Code: OK_1371910823.63

install - Output from command:

Detail Code: OK_1371910823.7

install - Output from command:

Detail Code: OK_1371910823.76

install - Output from command:

Compiling by running setup.py Installation will be to made to /home/iwatobipen/chemoinfo/AZOrange ERROR: Detail Code: 256_1371912804.03

install - Output from command: Building workstation version.

    Not using modules!No Modules loaded!
    Orange is being built in /tmp/AZOBuildDir
    The buildDir:  /tmp/AZOBuildDir
    nsprPath /usr/include
    /usr/include/python2.7
    /usr/include
    Setting env CPATH to /usr/include/python2.7:/usr/include to make azorange find nspr include files
    Building BBRC in:    /tmp/AZOBuildDir/orangeDependencies/src/fminer
    Building LAST in:    /tmp/AZOBuildDir/orangeDependencies/src/fminer
    Installing BBRC in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/fminer
    Installing LAST in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/fminer
    Copying clustering dir to orangeDependencies
    Building in:    /tmp/AZOBuildDir/orangeDependencies/src/ftm
    Installing in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/bin
    Compiling cinfony
    Building in:    /tmp/AZOBuildDir/orangeDependencies/src/cinfony
    Installing in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/cinfony
    Copying rdkit dir to orangeDependencies
    Building in:    /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/rdkit/build
    Installing in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/rdkit
    Copying cdk dir to orangeDependencies
    CompileOrange
    Not using the local R8
    Not using the local orngCRS
    Compiling openCV
    Building in:    /tmp/AZOBuildDir/orangeDependencies/src/opencv
    Installing in:  /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv
    Making install in 3rdparty
    make[1]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/3rdparty'
    make[2]: Entering directory`/tmp/AZOBuildDir/orangeDependencies/src/opencv/3rdparty'
    make[2]: Nothing to be done for `install-exec-am'.
    make[2]: Nothing to be done for`install-data-am'.
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/3rdparty'
    make[1]: Leaving directory`/tmp/AZOBuildDir/orangeDependencies/src/opencv/3rdparty'
    Making install in src
    make[1]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/src'
    make[2]: Entering directory`/tmp/AZOBuildDir/orangeDependencies/src/opencv/src'
    test -z "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib" || /bin/mkdir -p "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib"
     /bin/bash ../libtool   --mode=install /usr/bin/install -c   libcxcore.la libcv.la libcvaux.la libml.la libhighgui.la '/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib'
    libtool: install: /usr/bin/install -c .libs/libcxcore.so.4.0.0 /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcxcore.so.4.0.0
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcxcore.so.4.0.0 libcxcore.so.4 || { rm -f libcxcore.so.4 && ln -s libcxcore.so.4.0.0 libcxcore.so.4; }; })
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcxcore.so.4.0.0 libcxcore.so || { rm -f libcxcore.so && ln -s libcxcore.so.4.0.0 libcxcore.so; }; })
    libtool: install: /usr/bin/install -c .libs/libcxcore.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcxcore.la
    libtool: install: warning: relinking `libcv.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/src; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -O3 -g -march=pentium4 -ffast-math -fomit-frame-pointer -no-undefined -Wc, -version-info 4:0:0 -o libcv.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib cvprecomp.lo lib_cv.la libcxcore.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/cvprecomp.o  -Wl,--whole-archive ./.libs/lib_cv.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lcxcore -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -march=pentium4   -Wl,-soname -Wl,libcv.so.4 -o .libs/libcv.so.4.0.0
    libtool: install: /usr/bin/install -c .libs/libcv.so.4.0.0T /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcv.so.4.0.0
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcv.so.4.0.0 libcv.so.4 || { rm -f libcv.so.4 && ln -s libcv.so.4.0.0 libcv.so.4; }; })
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcv.so.4.0.0 libcv.so || { rm -f libcv.so && ln -s libcv.so.4.0.0 libcv.so; }; })
    libtool: install: /usr/bin/install -c .libs/libcv.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcv.la
    libtool: install: warning: relinking`libcvaux.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/src; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -O3 -g -march=pentium4 -ffast-math -fomit-frame-pointer -no-undefined -Wc, -version-info 4:0:0 -o libcvaux.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib libcvaux_la-cvauxprecomp.lo lib_cvaux.la libcxcore.la libcv.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/libcvaux_la-cvauxprecomp.o  -Wl,--whole-archive ./.libs/lib_cvaux.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/tmp/AZOBuildDir/orangeDependencies/src/opencv/src/.libs -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lcv -lcxcore -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -march=pentium4   -Wl,-soname -Wl,libcvaux.so.4 -o .libs/libcvaux.so.4.0.0
    libtool: install: /usr/bin/install -c .libs/libcvaux.so.4.0.0T /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcvaux.so.4.0.0
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcvaux.so.4.0.0 libcvaux.so.4 || { rm -f libcvaux.so.4 && ln -s libcvaux.so.4.0.0 libcvaux.so.4; }; })
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libcvaux.so.4.0.0 libcvaux.so || { rm -f libcvaux.so && ln -s libcvaux.so.4.0.0 libcvaux.so; }; })
    libtool: install: /usr/bin/install -c .libs/libcvaux.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libcvaux.la
    libtool: install: warning: relinking `libml.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/src; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -O3 -g -march=pentium4 -ffast-math -fomit-frame-pointer -no-undefined -Wc, -version-info 4:0:0 -o libml.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib dummy.lo lib_ml.la libcxcore.la ../3rdparty/lib_flann.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/dummy.o  -Wl,--whole-archive ./.libs/lib_ml.a ../3rdparty/.libs/lib_flann.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lcxcore -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -march=pentium4   -Wl,-soname -Wl,libml.so.4 -o .libs/libml.so.4.0.0
    libtool: install: /usr/bin/install -c .libs/libml.so.4.0.0T /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libml.so.4.0.0
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libml.so.4.0.0 libml.so.4 || { rm -f libml.so.4 && ln -s libml.so.4.0.0 libml.so.4; }; })
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libml.so.4.0.0 libml.so || { rm -f libml.so && ln -s libml.so.4.0.0 libml.so; }; })
    libtool: install: /usr/bin/install -c .libs/libml.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libml.la
    libtool: install: warning: relinking`libhighgui.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/src; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -O3 -g -march=pentium4 -ffast-math -fomit-frame-pointer -no-undefined -Wc, -version-info 4:0:0 -o libhighgui.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib precomp.lo lib_highgui.la libcxcore.la libcv.la -pthread -lgthread-2.0 -lrt -lglib-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lpng12 -ljpeg -lz -ltiff -ljasper -lraw1394 -ldc1394 -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/precomp.o  -Wl,--whole-archive ./.libs/lib_highgui.a -Wl,--no-whole-archive  -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/tmp/AZOBuildDir/orangeDependencies/src/opencv/src/.libs -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lcv -lcxcore -lgthread-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -L/usr/lib/i386-linux-gnu -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lpng12 -ljpeg -ltiff -ljasper -lraw1394 -ldc1394 -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -march=pentium4 -pthread   -pthread -Wl,-soname -Wl,libhighgui.so.4 -o .libs/libhighgui.so.4.0.0
    libtool: install: /usr/bin/install -c .libs/libhighgui.so.4.0.0T /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libhighgui.so.4.0.0
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libhighgui.so.4.0.0 libhighgui.so.4 || { rm -f libhighgui.so.4 && ln -s libhighgui.so.4.0.0 libhighgui.so.4; }; })
    libtool: install: (cd /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib && { ln -s -f libhighgui.so.4.0.0 libhighgui.so || { rm -f libhighgui.so && ln -s libhighgui.so.4.0.0 libhighgui.so; }; })
    libtool: install: /usr/bin/install -c .libs/libhighgui.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/libhighgui.la
    libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib
    ----------------------------------------------------------------------
    Libraries have been installed in:
       /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib
    If you ever happen to want to link against installed libraries
    in a given directory, LIBDIR, you must either use libtool, and
    specify the full pathname of the library, or use the `-LLIBDIR'
    flag during linking and do at least one of the following:
       - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
         during execution
       - add LIBDIR to the `LD_RUN_PATH' environment variable
         during linking
       - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
       - have your system administrator add LIBDIR to `/etc/ld.so.conf'

    See any operating system documentation about shared libraries for
    more information, such as the ld(1) and ld.so(8) manual pages.
    ----------------------------------------------------------------------
    make[2]: Nothing to be done for `install-data-am'.
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/src'
    make[1]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/src'
    Making install in include
    make[1]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/include'
    make[2]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/include'
    make[2]: Nothing to be done for `install-exec-am'.
    test -z "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/include/opencv" || /bin/mkdir -p "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/include/opencv"
     /usr/bin/install -c -m 644 opencv/cv.h opencv/cv.hpp opencv/cvaux.h opencv/cvaux.hpp opencv/cvcompat.h opencv/cvstreams.h opencv/cxmat.hpp opencv/cvtypes.h opencv/cvver.h opencv/cvvidsurv.hpp opencv/cvwimage.h opencv/cxcore.h opencv/cxcore.hpp opencv/cxerror.h opencv/cxflann.h opencv/cxmisc.h opencv/cxoperations.hpp opencv/cxtypes.h opencv/highgui.h opencv/highgui.hpp opencv/ml.h '/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/include/opencv'
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/include'
    make[1]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/include'
    Making install in utils
    make[1]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/utils'
    make[2]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/utils'
    make[2]: Nothing to be done for `install-exec-am'.
    make[2]: Nothing to be done for `install-data-am'.
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/utils'
    make[1]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/utils'
    Making install in interfaces
    make[1]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces'
    Making install in swig
    make[2]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig'
    Making install in filtered
    make[3]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/filtered'
    make[4]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/filtered'
    make[4]: Nothing to be done for `install-exec-am'.
    make[4]: Nothing to be done for `install-data-am'.
    make[4]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/filtered'
    make[3]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/filtered'
    Making install in general
    make[3]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    make  install-am
    make[4]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    make[5]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    make[5]: Nothing to be done for `install-exec-am'.
    make[5]: Nothing to be done for `install-data-am'.
    make[5]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    make[4]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    make[3]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/general'
    Making install in python
    make[3]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    make[4]: Entering directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    test -z "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv" || /bin/mkdir -p "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv"
     /bin/bash ../../../libtool   --mode=install /usr/bin/install -c   _cv.la _ml.la _highgui.la '/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv'
    libtool: install: warning: relinking `_cv.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -fPIC -I/usr/include/python2.7 -module -avoid-version -no-undefined -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/python2.7/config -lm -lpthread -ldl -lutil -lpython2.7 -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -o _cv.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv _cv_la-_cv.lo _cv_la-error.lo _cv_la-pyhelpers.lo _cv_la-cvshadow.lo ../../../src/libcv.la ../../../src/libcxcore.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/_cv_la-_cv.o .libs/_cv_la-error.o .libs/_cv_la-pyhelpers.o .libs/_cv_la-cvshadow.o   -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/tmp/AZOBuildDir/orangeDependencies/src/opencv/src/.libs -L/usr/lib/python2.7/config -lutil -lpython2.7 -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lcv -lcxcore -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions   -Wl,-soname -Wl,_cv.so -o .libs/_cv.so
    libtool: install: /usr/bin/install -c .libs/_cv.soT /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_cv.so
    libtool: install: /usr/bin/install -c .libs/_cv.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_cv.la
    libtool: install: warning: relinking `_ml.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -fPIC -I/usr/include/python2.7 -module -avoid-version -no-undefined -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/python2.7/config -lm -lpthread -ldl -lutil -lpython2.7 -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -o _ml.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv _ml_la-_ml.lo _ml_la-pyhelpers.lo ../../../src/libml.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/_ml_la-_ml.o .libs/_ml_la-pyhelpers.o   -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/tmp/AZOBuildDir/orangeDependencies/src/opencv/src/.libs -L/usr/lib/python2.7/config -lutil -lpython2.7 -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lml -lcxcore -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/i386-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions   -Wl,-soname -Wl,_ml.so -o .libs/_ml.so
    libtool: install: /usr/bin/install -c .libs/_ml.soT /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_ml.so
    libtool: install: /usr/bin/install -c .libs/_ml.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_ml.la
    libtool: install: warning: relinking `_highgui.la'
    libtool: install: (cd /tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python; /bin/bash /tmp/AZOBuildDir/orangeDependencies/src/opencv/libtool  --tag CXX --mode=relink g++ -fPIC -I/usr/include/python2.7 -module -avoid-version -no-undefined -Wl,-Bsymbolic-functions -Wl,-z,relro -L/usr/lib/python2.7/config -lm -lpthread -ldl -lutil -lpython2.7 -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions -o _highgui.la -rpath /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv _highgui_la-_highgui.lo _highgui_la-pyhelpers.lo ../../../src/libhighgui.la -lrt -lz -lpthread -ldl -lm )
    libtool: relink: warning: `/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/libcairo.la' seems to be moved
    libtool: relink: warning: `/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/libfreetype.la' seems to be moved
    libtool: relink: warning: `/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/libtiff.la' seems to be moved
    libtool: relink: warning: `/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/libraw1394.la' seems to be moved
    libtool: relink: g++ -shared -nostdlib /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crti.o /usr/lib/gcc/i686-linux-gnu/4.6/crtbeginS.o  .libs/_highgui_la-_highgui.o .libs/_highgui_la-pyhelpers.o   -Wl,-rpath -Wl,/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -L/tmp/AZOBuildDir/orangeDependencies/src/opencv/src/.libs -L/usr/lib/python2.7/config -lutil -lpython2.7 -L/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib -lhighgui -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu -lcv -lcxcore -lgthread-2.0 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgio-2.0 -lpangoft2-1.0 -lpangocairo-1.0 -L/usr/lib/i386-linux-gnu -lcairo -lpango-1.0 -lfreetype -lfontconfig -lgdk_pixbuf-2.0 -lgobject-2.0 -lglib-2.0 -lpng12 -ljpeg -ltiff -ljasper -lraw1394 -ldc1394 -lrt -lz -lpthread -ldl -L/usr/lib/gcc/i686-linux-gnu/4.6 -L/usr/lib/gcc/i686-linux-gnu/4.6/../../../../lib -L/lib/i386-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/i686-linux-gnu/4.6/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-linux-gnu/4.6/crtendS.o /usr/lib/gcc/i686-linux-gnu/4.6/../../../i386-linux-gnu/crtn.o  -Wl,-Bsymbolic-functions -Wl,-z -Wl,relro -Wl,-export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions   -pthread -Wl,-soname -Wl,_highgui.so -o .libs/_highgui.so
    libtool: install: /usr/bin/install -c .libs/_highgui.soT /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_highgui.so
    libtool: install: /usr/bin/install -c .libs/_highgui.lai /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv/_highgui.la
    libtool: finish: PATH="/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/sbin" ldconfig -n /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv
    ----------------------------------------------------------------------
    Libraries have been installed in:
       /home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv

    If you ever happen to want to link against installed libraries
    in a given directory, LIBDIR, you must either use libtool, and
    specify the full pathname of the library, or use the `-LLIBDIR'
    flag during linking and do at least one of the following:
       - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
         during execution
       - add LIBDIR to the `LD_RUN_PATH' environment variable
         during linking
       - usTraceback (most recent call last):
      File "setup.py", line 1165, in main
        self.__build()
      File "setup.py", line 199, in __build
        self.compileOpenCV()
      File "setup.py", line 969, in compileOpenCV
        checkStatus(stat, out,"Error installing opencv.")
      File "setup.py", line 26, in checkStatus
        sys.exit(1)
    SystemExit: 1
    e the `-Wl,-rpath -Wl,LIBDIR' linker flag
       - have your system administrator add LIBDIR to `/etc/ld.so.conf'

    See any operating system documentation about shared libraries for
    more information, such as the ld(1) and ld.so(8) manual pages.
    ----------------------------------------------------------------------
    test -z "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv" || /bin/mkdir -p "/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv"
     /usr/bin/install -c -m 644 __init__.py cv.py ml.py highgui.py adaptors.py matlab_syntax.py '/home/iwatobipen/chemoinfo/AZOrange/orangeDependencies/opencv/lib/python2.7/site-packages/opencv'
    /bin/bash: line 15: --destdir: command not found
    make[4]: *** [install-pkgpyexecPYTHON] Error 127
    make[4]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    make[3]: *** [install-am] Error 2
    make[3]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig/python'
    make[2]: *** [install-recursive] Error 1
    make[2]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces/swig'
    make[1]: *** [install-recursive] Error 1
    make[1]: Leaving directory `/tmp/AZOBuildDir/orangeDependencies/src/opencv/interfaces'
    make: *** [install-recursive] Error 1

    ++++++++++++++++++

    Error installing opencv.
    AZOrange is not built.

ERROR: Installation aborted! (Sat Jun 22 23:53:24 2013)

Finished (Sat Jun 22 23:53:24 2013)

The process spent 33 minutes

ERRORS during installation!!

Support FeedBack (Sat Jun 22 23:53:24 2013)

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engpedrorafael commented 11 years ago

As you have some flags set differently from the default, it'a hard to say what could wend wrong. Can you please start from scratch by strictly following the README file and only change setting in the setup.ini that are explicitly pointed in the README. If that still failing, send me again the details.log file.

iwatobipen commented 11 years ago

Dear.

I tried to re-install ubuntu12.04, and rebuild AZOrange. Then, Install was successful. Thank you for your advice. Takayuki