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AbbyCui / CalciumImagingAnalysis

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Newer method for start/stops #27

Closed cawarwick closed 3 months ago

cawarwick commented 3 months ago

Give an option for finding the starts/stops with a slope/derivative based approach rather than having it return to baseline. That works when we don't care at all about separately closely spaced events, but for the mechanical stims that are ~3-5 seconds apart, they should be separated but the current method does not. image

PsuedoCode: if this i frame >Threshold for 3 frames If the slope is >0 Continue until the slope is below 0 (it's decreasing) for at least 3 frames then assign an End else While i>threshold check each next ith frame if slope>0 i++

cawarwick commented 3 months ago

GreedyROI method has now been added