Abe404 / root_painter

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18387
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segmentation output folder should be automatically suggested/created #119

Open Abe404 opened 1 year ago

Abe404 commented 1 year ago

My personal suggestion is to create a “results” folder within each project folder that contains a segmentation folder within it that perhaps also includes the model number in the folder name. For example projects/project_name/results/seg_model_10

It's not clear for users that this is a sensible action. The results and segmentation output folders should be automatically populated in the segment folder fields (when the widget is opened) and then the folder should be created if it does not already exist.

See related discussion here: https://github.com/Abe404/root_painter/issues/114

Abe404 commented 1 year ago

Requirements:

Abe404 commented 1 year ago

Doing this work in a new branch https://github.com/Abe404/root_painter/compare/auto_suggest_output

Select model now appears above specify output folder: https://github.com/Abe404/root_painter/commit/9f983f5de21ab6bd18e4222f7480e2183dbf5788