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Abe404 / root_painter

RootPainter: Deep Learning Segmentation of Biological Images with Corrective Annotation
https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.18387
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segmentation RVE option #50

Closed Abe404 closed 1 year ago

Abe404 commented 2 years ago

Currently it takes a second step to convert segmentations to an RVE compatible format (black and white). For the users that require this extra step it will be more efficient to have the RVE compatible format as an option when initially segmenting the folder, so that a second step is not required.

This could be implemented at the same time to https://github.com/Abe404/root_painter/issues/49 as similar areas of the code will be changing.

Abe404 commented 1 year ago

This is now implemented in a branch https://github.com/Abe404/root_painter/tree/rve_segment

I will close this issue when it is available in a downloadable release.