search

Accio / KEGGgraph

The KEGGgraph package to parse KEGG pathways in R into graph objects
13 stars 3 forks source link

Request to Replace Sweave Vignettes with R Markdown #15

Open sonali8434 opened 1 year ago

sonali8434 commented 1 year ago

Hello @Accio, I'm a Sweave2Rmd volunteer. @jwokaty and I are trying to replace Bioconductor Sweave vignettes with R Markdown. It has many advantages over Sweave vignettes, such as R Markdown converts to HTML, uses BiocStyle, and is easier to maintain.

Would you consider accepting a pull request for the R Markdown version of following vignettes from one of our volunteers?

We'll ask you to review and accept the pull request. You'll also need to bump the version number in your DESCRIPTION file so that the Bioconductor build machines will recognize that a new version is available.

Thank you for your time, I look forward to your response.

Accio commented 1 year ago

Dear Sonali,

That's kind of you. Yes, please make PR and I am glad to get your help. If there is anything I can do to help you, please let me know, too.

Best regards, David

Am Mo., 26. Juni 2023 um 11:20 Uhr schrieb Sonali Kumari < @.***>:

Hello @Accio https://github.com/Accio, I'm a Sweave2Rmd https://github.com/Bioconductor/sweave2rmd volunteer. @jwokaty https://github.com/jwokaty and I are trying to replace Bioconductor Sweave vignettes with R Markdown. It has many advantages over Sweave vignettes, such as R Markdown converts to HTML, uses BiocStyle, and is easier to maintain.

Would you consider accepting a pull request for the R Markdown version of following vignettes from one of our volunteers?

  • KEGGgraph/vignettes/KEGGgraph.Rnw
  • KEGGgraph/vignettes/KEGGgraphApp.Rnw

We'll ask you to review and accept the pull request. You'll also need to bump the version number in your DESCRIPTION file so that the Bioconductor build machines will recognize that a new version is available.

Thank you for your time, I look forward to your response.

— Reply to this email directly, view it on GitHub https://github.com/Accio/KEGGgraph/issues/15, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAKVCIGITBZDA5LGSKCDJNTXNFH7BANCNFSM6AAAAAAZT332OU . You are receiving this because you were mentioned.Message ID: @.***>

-- Jitao David Zhang

http://jdzhang.me/ @.***

Inzlingerstrasse 53 4125 Riehen, Switzerland