I was using KEGGgraph to parse this lipid processing pathway, https://www.genome.jp/pathway/hsa01040, and some genes are actually depicted as lines, which have a different graphics description to other types of gene nodes.
In my own testing, this code handles both normal genes and compounds fine, as well as the added "line" genes.
Accio
commented
1 year ago
I was using KEGGgraph to parse this lipid processing pathway, https://www.genome.jp/pathway/hsa01040, and some genes are actually depicted as lines, which have a different graphics description to other types of gene nodes.
In my own testing, this code handles both normal genes and compounds fine, as well as the added "line" genes.