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Acellera
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htmd
HTMD: Programming Environment for Molecular Discovery
https://software.acellera.com/docs/latest/htmd/index.html
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Mps adaptive
#1091
AdriaPerezCulubret
closed
3 weeks ago
1
Request to Fix Error with 5-Methyl Cytosine amber Force Fields and Suggestion for Improvement
#1090
vas2201
closed
1 month ago
15
unable to execute the tutorial
#1089
pritam0070
opened
2 months ago
2
inconsistent results for ACEMD 2 and ACEMD 3
#1088
smar966
opened
2 months ago
19
Extract Trajectory Without Water and Ions
#1087
vas2201
closed
2 months ago
1
acemd Computation: atomRestraint harmonic caused external energy calculation
#1086
Jingdan-Chen
closed
2 months ago
2
Installation Error: acemd >=2019.01.24 , which does not exist
#1085
Jingdan-Chen
closed
2 months ago
2
Reg : Amber / Charmm Force field parameters for ARG (mono-methyl, dimethyl (asym, sym)
#1084
vas2201
closed
1 month ago
4
Provide simlist with single .psf file for all trajectories
#1083
AdriaPerezCulubret
closed
3 months ago
1
retry cython build for windows
#1082
stefdoerr
closed
4 months ago
0
Testing windows and mac builds
#1081
stefdoerr
closed
4 months ago
0
Trouble installing: htmd does not exist
#1080
MarioAsti8
closed
4 months ago
2
IndexError: arrays used as indices must be of integer (or boolean) type
#1079
vas2201
closed
4 months ago
6
old updated for bandit
#1078
AdriaPerezCulubret
closed
6 months ago
0
Parameters generated with charm.build on HTMD
#1077
H-EKE
closed
3 months ago
0
charmm build in htmd 2.3.8
#1076
shozebhaider
opened
6 months ago
3
Issue with model._active_set
#1075
antoinekoehl
closed
6 months ago
1
MOLECULE DESTROYED BY FATAL ERROR! Use resetpsf to start over.
#1074
H-EKE
closed
7 months ago
4
Error : model.viewStates(nucleic=True), not recognize the 'nucleic' parameter
#1073
vas2201
closed
3 months ago
5
acemd is failing with cuda version 12.1
#1072
vas2201
closed
8 months ago
1
Tutorial adaptative sampling
#1071
H-EKE
closed
3 months ago
4
ACEMD on multiple nodes and/or GPUs
#1070
danaeko
closed
9 months ago
1
Unable to prepare system with charmm FF
#1069
smar966
closed
8 months ago
7
Registration not working for HTMD3 2022_12_07
#1068
honzamican
closed
10 months ago
3
HTMD not working with GTX1650
#1067
khairbux2023
closed
10 months ago
3
Switch from NVT to NPT (Equilibration)
#1066
H-EKE
closed
1 year ago
1
3D FES profile
#1065
vas2201
opened
1 year ago
1
Co-solvent MD
#1064
H-EKE
closed
1 year ago
3
No structure pdb/psf file was generated
#1063
Grad1029
closed
1 year ago
2
systemPrepare add positive charge to HIP and HID
#1062
elifzeng
closed
1 year ago
5
Conda installation problems
#1061
tonigi
closed
1 year ago
4
ACEMD3 and RTX4070ti
#1060
anicoli
opened
1 year ago
4
Installation with conda stuck on "Solving Environment"
#1059
A-Sethi
closed
1 year ago
3
Update the registration URLs
#1058
raimis
closed
1 year ago
2
charmm.build problem
#1057
suice07
closed
1 year ago
2
RuntimeError (adaptive MD for RNA): when using a dihedral with an atom name containing a single quote
#1056
vas2201
opened
1 year ago
13
Problem with charmm.build
#1055
danaeko
opened
1 year ago
8
parametrization tool
#1054
mmagithub
closed
1 year ago
1
Request for Generating TPR and NDX Files for Protein system Using HTMD
#1053
vas2201
closed
1 year ago
6
RuntimeError
#1052
jmroldan1975
closed
1 year ago
2
amber.build issues
#1051
shozebhaider
closed
1 year ago
2
Issues with System building for RNA-ligand
#1050
vas2201
closed
8 months ago
13
How to construct the dihedrals.projections for RNA to include in adaptive MD ?
#1049
vas2201
closed
1 year ago
6
Issues with equilibration phase (Protein-RNA-complex)
#1048
vas2201
opened
1 year ago
11
Adaptative MD on local gpu
#1047
vas2201
closed
1 year ago
5
Input file options - parameter "exclude"
#1046
szotkowska-v
opened
1 year ago
0
Building a membrane with more than three different lipids
#1045
Saleh-OM4R
opened
1 year ago
2
freshly installed version retuned as expired
#1044
msturlese2
opened
1 year ago
1
Problems installing HTMD
#1043
lblaabjerg
closed
1 year ago
10
Charmm file error on membrane build
#1042
shozebhaider
closed
1 year ago
8
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