Acellera / htmd

HTMD: Programming Environment for Molecular Discovery
https://software.acellera.com/docs/latest/htmd/index.html
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Distance restraints #1039

Closed danaeko closed 1 year ago

danaeko commented 1 year ago

Dear Acellera group,

I want to run an equilibration using distance restraints between several atoms and therefore I would like to ask you how can I specify distance restraints between two atoms in my input file for ACEMD. The option "atomRestraint" is only for positional restraints, right?

Thank you in advance

stefdoerr commented 1 year ago

@raimis is there support for distance restraints in ACEMD3?

danaeko commented 1 year ago

ACEMD allows only positional restraints? There is no implementation like extra bond (NAMD)?

raimis commented 1 year ago

ACEMD supports PLUMED (https://software.acellera.com/acemd/manual.html#metadynamics). With PLUMED, you can set up a huge variety of restraints.

danaeko commented 1 year ago

Thank you, I will try it!