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Acribbs / tRNAnalysis

tRNA analysis workflow
MIT License
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invalid sample file names lead to termination in build_report #14

Closed slobentanzer closed 5 years ago

slobentanzer commented 5 years ago

hi adam, i ran my own samples, whose filenames coincidentally start with numbers (got them this way from the sequencing). the pipeline itself ran ok, but in the build_report stage, i got an exception from R, undefined columns selected, due to read.table() adding an X in front of every colname.

i fixed it by setting check.names = F, but i don't know if this would be a desirable default.

kind regards,

sebastian

Acribbs commented 5 years ago

Thanks for making the issue, this is something I hate about R in general (especially since it doesn't give you any warnings).

I would prefer not to use check.names = F at the moment as I would like R to warn if there are duplicate names. I can add a section in the documentation stating that the names shouldn't be named with an int at the beginning.