Closed baoilleach closed 2 years ago
thanks, are right. Here was a bug related to using the same closure number two times at the same atom. This is fixed and will be pushed with the next regular update (supposedly early next week).
On Fri, Jun 22, 2018 at 3:42 PM, baoilleach notifications@github.com wrote:
Given the Kekule SMILES:
C1=NC2=C(N1)CCC3=NON=C23 11048
...OpenChemLib (2018.5) writes out the following aromatic SMILES:
C(Cc1nonc-11)c2c1nc[nH]2
I think that you probably meant:
C(Cc1nonc1-1)c2c1nc[nH]2
That is, I think you wanted an implicit aromatic bond to close the ring, and an explicit single bond to join the two aromatic rings.
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/Actelion/openchemlib/issues/28, or mute the thread https://github.com/notifications/unsubscribe-auth/AJpSBiao7LCDdGy4tScK6ToCMLyou3JGks5t_PQxgaJpZM4Uz0WL .
--
The information of this email and in any file transmitted with it is strictly confidential and may be legally privileged. It is intended solely for the addressee. If you are not the intended recipient, any copying, distribution or any other use of this email is prohibited and may be unlawful. In such case, you should please notify the sender immediately and destroy this email. The content of this email is not legally binding unless confirmed by letter. Any views expressed in this message are those of the individual sender, except where the message states otherwise and the sender is authorized to state them to be the views of the sender's company.
Given the Kekule SMILES:
...OpenChemLib (2018.5) writes out the following aromatic SMILES:
I think that you probably meant:
That is, I think you wanted an implicit aromatic bond to close the ring, and an explicit single bond to join the two aromatic rings.