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ActiveBrainAtlas2 / activebrainatlasadmin

This is the ActiveBrainAtlas database portal. This project provides the admin area to edit data associated with the Active Brain Atlas project. It also provides the REST API.
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Segmentation Tool Reactivation (3D volume creation) #132

Open mm6654 opened 1 year ago

mm6654 commented 1 year ago

Currently, under the polygon tool "Segment selected volume" is disabled.

image

drinehart1 commented 1 year ago

Button is disabled because we need to sort out where 3D contours are created (not on web server due to security model). May be submitted to web server, which will send to processing node elsewhere with write access to shared storage

drinehart1 commented 1 year ago

talk w/ Kevin -> provision VM for calcs (this + back-end for data sharing portal)

by 14-DEC-2022

drinehart1 commented 1 year ago

Can use imageserv.dk.ucsd.edu for back-end processing. Setting up slurm on this host

Note: slurm setup will also be useful for spline (smoothing of polygons) generation (no issue) and issue #141 (NWB generation)