ActiveBrainAtlas2 / activebrainatlasadmin

This is the ActiveBrainAtlas database portal. This project provides the admin area to edit data associated with the Active Brain Atlas project. It also provides the REST API.
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Annotation Dropdown - sets list #43

Open drinehart1 opened 2 years ago

drinehart1 commented 2 years ago

List is getting too convoluted with each 'save' click (in addition to brains, structures, etc.). Suggestion to make 2 modifications:

1) add sub-menus in dropdown (https://www.w3schools.com/bootstrap/tryit.asp?filename=trybs_ref_js_dropdown_multilevel_css&stacked=h). The categories for principal list should follow most frequently used selections (perhaps sections). I think it also makes since to filter default list to only show annotations for prep_ids currently visible. If new layer is created with additional prep_id, we can modify dropdown

2) Add "advanced search" button to potentially search all indexed categories (just polygons + com), just foundation brains, only from institution X, "recent" (past 14 days), etc. (basically all meta info we capture for animals).

drinehart1 commented 2 years ago

New addition [by Ed] on brainsharer.org will also help (if not remove need for many users) to easily select brains, annotations, etc. in https://brainsharer.org/create-view

If this allows user to register/login and then open desired data/metadata, impact of never-ending list may be somewhat mitigated

drinehart1 commented 1 year ago

NEEDS (not just list length): align across brains: detected cells, COM, active atlas import

Beth and Marissa to provide more details on search attributes required (by Mon, 19-DEC)

befriedman commented 1 year ago

Data types that could be imported to an existing NG session: Atlas reference brain landmarks Brain images - here the brain can be aligned directly to the host brain and or both brains can be aligned to the atlas reference brain Human annotations for host brain and/ or for other brains to include: cell detections, polygons, coms Machine learning annotations for labeled neurons for the host brain and/or other experimental brains

befriedman commented 1 year ago

also last but not least- QC for machine annotations- but these should only attach to host brain

drinehart1 commented 10 months ago

Neuron fetch tool filter (id-810, segmentation layer) - can we repurpose to filter annotations?