We found there is one column missing on qpileup view output. In below example, "LowReadCount_for" shown on the header but counts are missing. We expect
## Reference Position Ref_base ... HighNonreference_for LowReadCount_for A_rev ...
chrMT 1 G ... 0 0 4 ...
but we got
## Reference Position Ref_base ... HighNonreference_for LowReadCount_for A_rev ...
chrMT 1 G ... 0 4 ...
This bug is fixed, there is a tab delimiter is missing between the forward and reverse elements.
Meanwhile, the document is updated: fixted hdf column name error ("Dup" should be "DupCount"); and missing column "CigarN_start".
Type of change
Please delete options that are not relevant.
[x] Bug fix (non-breaking change which fixes an issue)
[ ] New feature (non-breaking change which adds functionality)
[ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
[ ] This change requires a documentation update
How Has This Been Tested?
tested on a testing data set
Are WDL Updates Required?
no
Checklist:
[X] My code follows the style guidelines of this project
[X] I have performed a self-review of my own code
[X] I have commented my code, particularly in hard-to-understand areas
[X] My changes generate no new warnings
[X] I have added tests that prove my fix is effective or that my feature works
[X] New and existing unit tests pass locally with my changes
Description
We found there is one column missing on qpileup view output. In below example, "LowReadCount_for" shown on the header but counts are missing. We expect
but we got
This bug is fixed, there is a tab delimiter is missing between the forward and reverse elements.
Meanwhile, the document is updated: fixted hdf column name error ("Dup" should be "DupCount"); and missing column "CigarN_start".
Type of change
Please delete options that are not relevant.
How Has This Been Tested?
tested on a testing data set
Are WDL Updates Required?
no
Checklist: