Added class (VcfAddGeneModel) that will populate the info field of a vcf record with the corresponding info from a (supplied) gene model file.
Intended use case is for the rare occasions where a new qsignature snp positions vcf file is being created and gene model annotations are required.
Type of change
Please delete options that are not relevant.
[X] New feature (non-breaking change which adds functionality)
How Has This Been Tested?
A new unit test has been created to verify that the new feature is working as expected.
Existing unit tests pass
Are WDL Updates Required?
No
Checklist:
[X] My code follows the style guidelines of this project
[X] I have performed a self-review of my own code
[X] I have commented my code, particularly in hard-to-understand areas
[X] My changes generate no new warnings
[X] I have added tests that prove my fix is effective or that my feature works
[X] New and existing unit tests pass locally with my changes
Description
Added class (
VcfAddGeneModel) that will populate the info field of a vcf record with the corresponding info from a (supplied) gene model file. Intended use case is for the rare occasions where a new qsignature snp positions vcf file is being created and gene model annotations are required.Type of change
Please delete options that are not relevant.
How Has This Been Tested?
A new unit test has been created to verify that the new feature is working as expected. Existing unit tests pass
Are WDL Updates Required?
No
Checklist: