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Default value for build (37) is always used in maf file #324

Open holmeso opened 1 year ago

holmeso commented 1 year ago

Describe the bug The NCBI_Build column in the mafs generated by qannotate's Vcf2Maf class use the default value of the MafElement.NCBI_Build enum element, which is set to "37"

This needs to change so that the actual build is used (ie. 38 if applicable).

https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/

To Reproduce Steps to reproduce the behavior: Run qannotate's Vcf2Maf class and examine the output

Expected behavior The NCBI_Build field should contain the build that was used to map the BAMs